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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004826

染色体: Chr02 坐标: 70369528-70379042 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004826
名称SmilChr02G004826
描述pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向70369528 - 70379042 / -

ID 对照

NCBI Gene IDLOC131008820
GeneID131008820
locus_tag-
NCBI NameLOC131008820
原始查询SmilChr02G004826

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like
产物pentatricopeptide repeat-containing protein At2g03880%2C mitochondrial-like
ArabidopsisAT1G16480 (AT1G16480)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838218]
identity=36.4; qcov=0.899; evalue=0; confidence=medium
RiceOs09g0251500
-
identity=39.2; qcov=0.905; evalue=0; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131008820

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057791856.1
2 Chloroplast 叶绿体 0.20000 XP_057791856.1
3 Nucleus 细胞核 0.00000 XP_057791856.1
4 Chromosome 染色体 0.00000 XP_057791856.1
5 Centromere 着丝粒 0.00000 XP_057791856.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:70370328 G A EMS_canonical_SNV CDS_variant 5 A11,B117,B76,C61,D2
Chr2:70370418 C T EMS_canonical_SNV CDS_variant 1 B136
Chr2:70370472 G A EMS_canonical_SNV CDS_variant 1 B104
Chr2:70370476 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:70370694 G A EMS_canonical_SNV CDS_variant 1 C33
Chr2:70370713 G A EMS_canonical_SNV CDS_variant 1 B119
Chr2:70370824 G A EMS_canonical_SNV CDS_variant 5 B107,B138,B81,B91,C85
Chr2:70370992 C T EMS_canonical_SNV CDS_variant 5 B19,B27,B46,B9,C54
Chr2:70371110 G A EMS_canonical_SNV CDS_variant 5 B19,B27,B46,B9,C54
Chr2:70371141 C T EMS_canonical_SNV CDS_variant 1 B32
Chr2:70371233 G A EMS_canonical_SNV CDS_variant 5 A24,A4,B24,B33,C81
Chr2:70371271 G A EMS_canonical_SNV CDS_variant 3 C21,C47,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791856.1
977 aa
N
1
488
977
PPR
PPR_2
PPR_3
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_3
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 137-163 aa PF13041 PPR_2 163-210 aa PF13812 PPR_3 164-210 aa PF01535 PPR 166-195 aa PF01535 PPR 239-265 aa PF01535 PPR 268-293 aa PF01535 PPR 341-362 aa PF13812 PPR_3 365-408 aa PF13041 PPR_2 365-409 aa PF01535 PPR 368-398 aa PF01535 PPR 441-467 aa PF13041 PPR_2 466-513 aa PF13812 PPR_3 467-512 aa PF01535 PPR 469-499 aa PF01535 PPR 542-567 aa PF13041 PPR_2 567-615 aa PF01535 PPR 570-600 aa PF01535 PPR 643-667 aa PF13041 PPR_2 668-716 aa PF01535 PPR 671-699 aa PF01535 PPR 707-733 aa PF01535 PPR 744-768 aa PF20431 E_motif 786-848 aa PF14432 DYW_deaminase 884-977 aa
XP_057791857.1
968 aa
N
1
484
968
PPR
PPR_2
PPR_3
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_3
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 128-154 aa PF13041 PPR_2 154-201 aa PF13812 PPR_3 155-201 aa PF01535 PPR 157-186 aa PF01535 PPR 230-256 aa PF01535 PPR 259-284 aa PF01535 PPR 332-353 aa PF13812 PPR_3 356-399 aa PF13041 PPR_2 356-400 aa PF01535 PPR 359-389 aa PF01535 PPR 432-458 aa PF13041 PPR_2 457-504 aa PF13812 PPR_3 458-503 aa PF01535 PPR 460-490 aa PF01535 PPR 533-558 aa PF13041 PPR_2 558-606 aa PF01535 PPR 561-591 aa PF01535 PPR 634-658 aa PF13041 PPR_2 659-707 aa PF01535 PPR 662-690 aa PF01535 PPR 698-724 aa PF01535 PPR 735-759 aa PF20431 E_motif 777-839 aa PF14432 DYW_deaminase 875-968 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791856.1 Pfam PF01535 PPR Repeat 137 163 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF13041 PPR_2 Repeat 163 210 6.1e-89 292.7 PPR repeat family
XP_057791856.1 Pfam PF13812 PPR_3 Repeat 164 210 1.7e-32 112.0 Pentatricopeptide repeat domain
XP_057791856.1 Pfam PF01535 PPR Repeat 166 195 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 239 265 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 268 293 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 341 362 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF13812 PPR_3 Repeat 365 408 1.7e-32 112.0 Pentatricopeptide repeat domain
XP_057791856.1 Pfam PF13041 PPR_2 Repeat 365 409 6.1e-89 292.7 PPR repeat family
XP_057791856.1 Pfam PF01535 PPR Repeat 368 398 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 441 467 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF13041 PPR_2 Repeat 466 513 6.1e-89 292.7 PPR repeat family
XP_057791856.1 Pfam PF13812 PPR_3 Repeat 467 512 1.7e-32 112.0 Pentatricopeptide repeat domain
XP_057791856.1 Pfam PF01535 PPR Repeat 469 499 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 542 567 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF13041 PPR_2 Repeat 567 615 6.1e-89 292.7 PPR repeat family
XP_057791856.1 Pfam PF01535 PPR Repeat 570 600 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 643 667 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF13041 PPR_2 Repeat 668 716 6.1e-89 292.7 PPR repeat family
XP_057791856.1 Pfam PF01535 PPR Repeat 671 699 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 707 733 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF01535 PPR Repeat 744 768 6.4e-77 249.3 PPR repeat
XP_057791856.1 Pfam PF20431 E_motif Repeat 786 848 1.5e-26 93.1 E motif
XP_057791856.1 Pfam PF14432 DYW_deaminase Domain 884 977 2.7e-35 120.8 DYW family of nucleic acid deaminases
XP_057791857.1 Pfam PF01535 PPR Repeat 128 154 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF13041 PPR_2 Repeat 154 201 5.3e-89 292.9 PPR repeat family
XP_057791857.1 Pfam PF13812 PPR_3 Repeat 155 201 1.5e-32 112.2 Pentatricopeptide repeat domain
XP_057791857.1 Pfam PF01535 PPR Repeat 157 186 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 230 256 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 259 284 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 332 353 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF13812 PPR_3 Repeat 356 399 1.5e-32 112.2 Pentatricopeptide repeat domain
XP_057791857.1 Pfam PF13041 PPR_2 Repeat 356 400 5.3e-89 292.9 PPR repeat family
XP_057791857.1 Pfam PF01535 PPR Repeat 359 389 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 432 458 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF13041 PPR_2 Repeat 457 504 5.3e-89 292.9 PPR repeat family
XP_057791857.1 Pfam PF13812 PPR_3 Repeat 458 503 1.5e-32 112.2 Pentatricopeptide repeat domain
XP_057791857.1 Pfam PF01535 PPR Repeat 460 490 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 533 558 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF13041 PPR_2 Repeat 558 606 5.3e-89 292.9 PPR repeat family
XP_057791857.1 Pfam PF01535 PPR Repeat 561 591 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 634 658 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF13041 PPR_2 Repeat 659 707 5.3e-89 292.9 PPR repeat family
XP_057791857.1 Pfam PF01535 PPR Repeat 662 690 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 698 724 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF01535 PPR Repeat 735 759 5.5e-77 249.5 PPR repeat
XP_057791857.1 Pfam PF20431 E_motif Repeat 777 839 1.5e-26 93.1 E motif
XP_057791857.1 Pfam PF14432 DYW_deaminase Domain 875 968 2.7e-35 120.8 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057935874.1
GATAATCATACATTACTGATGTCTTAGTGAGGCATGACCCGTTTCTCCCAAATGTTTGTGAAGTTTAGTCCTGTAACAGGAGTGAGAGGATTAATAGAGGCACTAAGAGAAGCAAAAGGCGAGGAGTTTTGAAAGAAAGAGATGCGCAATCCACCACAAACCGCAATCAGAGGCATTCTTTCCACTCTCCACGGAGTTCCCGCCAGGCGTTCGACGTTTTGCCCGGCCAAGAACCATCTCCCGAACTCGCTCAGCTCCCG...
XM_057935873.1
GCAAATTGAAGTTCCTCCCGCGACAGCAGCAACGCCACAGCCAGCGGCGAAAGCTTTCGTCAAGTCGTCAACAACCAATAAATATCTCATGATTTTCAAGTTTTCTCGTAATTAATTTAATGGGATGCGATTTCTGCTGTACACAGATGCGCAATCCACCACAAACCGCAATCAGAGGCATTCTTTCCACTCTCCACGGAGTTCCCGCCAGGCGTTCGACGTTTTGCCCGGCCAAGAACCATCTCCCGAACTCGCTCAGC...

CDS

2 records

下载 CDS FASTA
LOC131008820
ATGGGATGCGATTTCTGCTGTACACAGATGCGCAATCCACCACAAACCGCAATCAGAGGCATTCTTTCCACTCTCCACGGAGTTCCCGCCAGGCGTTCGACGTTTTGCCCGGCCAAGAACCATCTCCCGAACTCGCTCAGCTCCCGCTCTTCTATTTCTACTTCCGCCGCAAGAATTTCGGAAAAGGCAAATTGGGAGTTCAGTCGTGGAAGAAAACCGGAAAAGATACGATCTTTGCTTGAGCTAAAAACATCAGAGAC...
LOC131008820
ATGCGCAATCCACCACAAACCGCAATCAGAGGCATTCTTTCCACTCTCCACGGAGTTCCCGCCAGGCGTTCGACGTTTTGCCCGGCCAAGAACCATCTCCCGAACTCGCTCAGCTCCCGCTCTTCTATTTCTACTTCCGCCGCAAGAATTTCGGAAAAGGCAAATTGGGAGTTCAGTCGTGGAAGAAAACCGGAAAAGATACGATCTTTGCTTGAGCTAAAAACATCAGAGACTTCTTGTTTGGAGGAAGGAGTCGAGAA...

Protein

2 records

下载 Protein FASTA
XP_057791856.1
MGCDFCCTQMRNPPQTAIRGILSTLHGVPARRSTFCPAKNHLPNSLSSRSSISTSAARISEKANWEFSRGRKPEKIRSLLELKTSETSCLEEGVEKSRLKWYSEKLRDCAAGMCRREGRVIHGCIIRRGTEPDVHLWVSLINFYAKCGALEFSRGVFEQMPVKDVVSWTALISGYVAQGNGRESVELFYEMRSDDVRPNEFTLATVLKGCSLSSDLGFGKQVHAEVVKIGVLSDAYIGSSLIDLYSKCGEMEYADDIFCM...
XP_057791857.1
MRNPPQTAIRGILSTLHGVPARRSTFCPAKNHLPNSLSSRSSISTSAARISEKANWEFSRGRKPEKIRSLLELKTSETSCLEEGVEKSRLKWYSEKLRDCAAGMCRREGRVIHGCIIRRGTEPDVHLWVSLINFYAKCGALEFSRGVFEQMPVKDVVSWTALISGYVAQGNGRESVELFYEMRSDDVRPNEFTLATVLKGCSLSSDLGFGKQVHAEVVKIGVLSDAYIGSSLIDLYSKCGEMEYADDIFCMMPEKNAFLW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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