当前解析结果
SmilChr02G004827| 统一新 Gene ID | SmilChr02G004827 |
|---|---|
| 名称 | SmilChr02G004827 |
| 描述 | DNAJ protein JJJ1 homolog |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70375089 - 70379544 / + |
| NCBI Gene ID | LOC131008821 |
|---|---|
| GeneID | 131008821 |
| locus_tag | - |
| NCBI Name | LOC131008821 |
| 原始查询 | SmilChr02G004827 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAJ protein JJJ1 homolog |
| 产物 | DNAJ protein JJJ1 homolog |
| Arabidopsis | AT1G74250 (AT1G74250)DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843765] identity=45.5; qcov=1.09; evalue=6.42e-168; confidence=high |
| Rice | Os12g0502700 (OsDjC81)- identity=45; qcov=1.03; evalue=2.07e-131; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00226 (DnaJ); PF12171 (zf-C2H2_jaz); PF12874 (zf-met); PF21884 (ZUO1-like_ZHD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008821 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791858.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057791858.1 |
| 3 | Nucleolus | 核仁 | 0.20000 | XP_057791860.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791858.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791858.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70375253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C32 |
Chr2:70375256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C46 |
Chr2:70375265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,B73,C22,C3 |
Chr2:70375283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B115,B67,C66 |
Chr2:70375296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C83 |
Chr2:70375299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B35,B75,C82 |
Chr2:70375300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B32,C14,C24 |
Chr2:70375308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B55,C19,C54,C74 |
Chr2:70375310 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B24,B97,C37,C74 |
Chr2:70375325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B4,B57,B90,C12,C41 |
Chr2:70375333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,C54 |
Chr2:70375343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791858.1PF00226
DnaJ 9-74 aa
PF21884
ZUO1-like_ZHD 120-232 aa
PF12874
zf-met 298-322 aa
PF12171
zf-C2H2_jaz 298-323 aa
XP_057791860.1PF00226
DnaJ 9-74 aa
PF21884
ZUO1-like_ZHD 120-232 aa
PF12874
zf-met 298-322 aa
PF12171
zf-C2H2_jaz 298-323 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791858.1 |
Pfam | PF00226 |
DnaJ | Domain | 9 | 74 | 2.6e-20 | 73.0 | DnaJ domain |
XP_057791858.1 |
Pfam | PF21884 |
ZUO1-like_ZHD | Domain | 120 | 232 | 1e-20 | 75.0 | Zuotin-like, zuotin homology domain |
XP_057791858.1 |
Pfam | PF12874 |
zf-met | Domain | 298 | 322 | 4.8e-07 | 30.6 | Zinc-finger of C2H2 type |
XP_057791858.1 |
Pfam | PF12171 |
zf-C2H2_jaz | Family | 298 | 323 | 4.8e-10 | 40.1 | Zinc-finger double-stranded RNA-binding |
XP_057791860.1 |
Pfam | PF00226 |
DnaJ | Domain | 9 | 74 | 2.3e-20 | 73.1 | DnaJ domain |
XP_057791860.1 |
Pfam | PF21884 |
ZUO1-like_ZHD | Domain | 120 | 232 | 9.8e-21 | 75.1 | Zuotin-like, zuotin homology domain |
XP_057791860.1 |
Pfam | PF12874 |
zf-met | Domain | 298 | 322 | 1.1e-06 | 29.4 | Zinc-finger of C2H2 type |
XP_057791860.1 |
Pfam | PF12171 |
zf-C2H2_jaz | Family | 298 | 323 | 4.6e-10 | 40.1 | Zinc-finger double-stranded RNA-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。