Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004830`

染色体: Chr02 坐标: 70403040-70416313 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004830`
名称	SmilChr02G004830
描述	uncharacterized SmilChr02G004830
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70403040 - 70416313 / `+`

ID 对照

NCBI Gene ID	`LOC131008825`
GeneID	`131008825`
locus_tag	`-`
NCBI Name	`LOC131008825`
原始查询	`SmilChr02G004830`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830674]; symbol=AT5G07810; hit=AT5G07810; species=arabidopsis; confidence=high
产物	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830674]; symbol=AT5G07810; hit=AT5G07810; species=arabidopsis; confidence=high
Arabidopsis	`AT5G07810` (AT5G07810) SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830674] identity=53.7; qcov=1.04; evalue=0; confidence=high
Rice	`Os07g0598300` (OJ1579_C03.20-2) - identity=53.7; qcov=0.512; evalue=1.35e-160; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0004519 (endonuclease activity); GO:0005524 (ATP binding); GO:0006281 (DNA repair); GO:0008270 (zinc ion binding); GO:0031297 (replication fork processing); GO:0043596 (nuclear replication fork); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00270 (DEAD); PF00271 (Helicase_C); PF01844 (HNH); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131008825

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791866.1`
2	Nucleoplasm	核质	0.40000	`XP_057791869.1`
3	Chromosome	染色体	0.00000	`XP_057791866.1`
4	Centromere	着丝粒	0.00000	`XP_057791866.1`
5	Chromatin	染色质	0.00000	`XP_057791866.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70403198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,C18
`Chr2:70403238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,C61
`Chr2:70403327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B67,C36,C74,D11
`Chr2:70403346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,C42
`Chr2:70403351`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B6
`Chr2:70403351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr2:70404178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,C72
`Chr2:70404239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B68,B74,C48,C79,C87
`Chr2:70404326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:70404425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B73,C35,C4,D6
`Chr2:70405501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr2:70406251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B130,C53,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791866.1

1154 aa

577

1154

SNF2-rel_dom

DEAD

ResIII

Helicase_C

HNH

PF00176 SNF2-rel_dom 207-453 aa PF00270 DEAD 217-361 aa PF04851 ResIII 219-359 aa PF00271 Helicase_C 529-630 aa PF01844 HNH 1019-1053 aa

XP_057791867.1

1150 aa

575

1150

SNF2-rel_dom

DEAD

ResIII

Helicase_C

HNH

PF00176 SNF2-rel_dom 207-449 aa PF00270 DEAD 217-361 aa PF04851 ResIII 219-359 aa PF00271 Helicase_C 525-626 aa PF01844 HNH 1015-1049 aa

XP_057791868.1

1050 aa

525

1050

SNF2-rel_dom

DEAD

ResIII

Helicase_C

HNH

PF00176 SNF2-rel_dom 103-349 aa PF00270 DEAD 113-257 aa PF04851 ResIII 115-255 aa PF00271 Helicase_C 425-526 aa PF01844 HNH 915-949 aa

XP_057791869.1

928 aa

464

928

SNF2-rel_dom

ResIII

Helicase_C

HNH

PF00176 SNF2-rel_dom 1-228 aa PF04851 ResIII 2-133 aa PF00271 Helicase_C 303-404 aa PF01844 HNH 793-827 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791866.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	207	453	6.5e-30	104.9	SNF2-related domain
`XP_057791866.1`	Pfam	`PF00270`	DEAD	Domain	217	361	1.4e-06	28.9	DEAD/DEAH box helicase
`XP_057791866.1`	Pfam	`PF04851`	ResIII	Family	219	359	8.3e-08	33.0	Type III restriction enzyme, res subunit
`XP_057791866.1`	Pfam	`PF00271`	Helicase_C	Domain	529	630	1.9e-17	64.2	Helicase conserved C-terminal domain
`XP_057791866.1`	Pfam	`PF01844`	HNH	Family	1019	1053	2.7e-06	28.2	HNH endonuclease
`XP_057791867.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	207	449	4.1e-30	105.6	SNF2-related domain
`XP_057791867.1`	Pfam	`PF00270`	DEAD	Domain	217	361	1.4e-06	28.9	DEAD/DEAH box helicase
`XP_057791867.1`	Pfam	`PF04851`	ResIII	Family	219	359	8.1e-08	33.1	Type III restriction enzyme, res subunit
`XP_057791867.1`	Pfam	`PF00271`	Helicase_C	Domain	525	626	2e-17	64.1	Helicase conserved C-terminal domain
`XP_057791867.1`	Pfam	`PF01844`	HNH	Family	1015	1049	2.7e-06	28.2	HNH endonuclease
`XP_057791868.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	103	349	5.8e-30	105.1	SNF2-related domain
`XP_057791868.1`	Pfam	`PF00270`	DEAD	Domain	113	257	1.3e-06	29.0	DEAD/DEAH box helicase
`XP_057791868.1`	Pfam	`PF04851`	ResIII	Family	115	255	7.4e-08	33.2	Type III restriction enzyme, res subunit
`XP_057791868.1`	Pfam	`PF00271`	Helicase_C	Domain	425	526	1.6e-17	64.5	Helicase conserved C-terminal domain
`XP_057791868.1`	Pfam	`PF01844`	HNH	Family	915	949	2.4e-06	28.3	HNH endonuclease
`XP_057791869.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	1	228	3.8e-25	89.3	SNF2-related domain
`XP_057791869.1`	Pfam	`PF04851`	ResIII	Family	2	133	8.8e-07	29.7	Type III restriction enzyme, res subunit
`XP_057791869.1`	Pfam	`PF00271`	Helicase_C	Domain	303	404	1.1e-17	64.9	Helicase conserved C-terminal domain
`XP_057791869.1`	Pfam	`PF01844`	HNH	Family	793	827	1.9e-06	28.6	HNH endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057935883.1
CAGTAGTAATTGTAAGTGAGTGACATCCTTGGTTCCCGCTCCACAGCAGCTGCTCTCGTTTCAAAACAAGGCACTGATATGGAAAATCGAGGAGAAGATCAAATCACAGAAGAGCAGCGGAAGCGGGCCGAAGCGAACCGGGCCGCGGCCCTAGCCAAGCGCAAGGCCATCCTCTCGCTCACTGGACAACCCGCTCATGACTGGAACCTCTCCAAGTACCGCAAGCTCTCTCCACACGCTAATATCCCCCTTGCCAAACA...

XM_057935884.1
CAGTAGTAATTGTAAGTGAGTGACATCCTTGGTTCCCGCTCCACAGCAGCTGCTCTCGTTTCAAAACAAGGCACTGATATGGAAAATCGAGGAGAAGATCAAATCACAGAAGAGCAGCGGAAGCGGGCCGAAGCGAACCGGGCCGCGGCCCTAGCCAAGCGCAAGGCCATCCTCTCGCTCACTGGACAACCCGCTCATGACTGGAACCTCTCCAAGTACCGCAAGCTCTCTCCACACGCTAATATCCCCCTTGCCAAACA...

CDS

4 records

下载 CDS FASTA

LOC131008825
ATGGAAAATCGAGGAGAAGATCAAATCACAGAAGAGCAGCGGAAGCGGGCCGAAGCGAACCGGGCCGCGGCCCTAGCCAAGCGCAAGGCCATCCTCTCGCTCACTGGACAACCCGCTCATGACTGGAACCTCTCCAAGTACCGCAAGCTCTCTCCACACGCTAATATCCCCCTTGCCAAACAGCCCCTTACCTCTGGCTCGAGCGGCCCGCCCGAGAAACTCCGGGTCCGCCTGGAAATTTGCTCGCCCGATTCTTTTTC...

Protein

4 records

下载 Protein FASTA

XP_057791866.1
MENRGEDQITEEQRKRAEANRAAALAKRKAILSLTGQPAHDWNLSKYRKLSPHANIPLAKQPLTSGSSGPPEKLRVRLEICSPDSFSVTPFAVEGFAFPGEDACFEKLRDCFSNVALSHYTQNTSGGKACVYRLYDYQLVLKSLKNRKDIECEEIPWGTFNVVEKFSHSFIYGRWIPCRPEHLPDEKVDGLISELPIALLNALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFMKDGSILVVCPAILRYSW...

XP_057791867.1
MENRGEDQITEEQRKRAEANRAAALAKRKAILSLTGQPAHDWNLSKYRKLSPHANIPLAKQPLTSGSSGPPEKLRVRLEICSPDSFSVTPFAVEGFAFPGEDACFEKLRDCFSNVALSHYTQNTSGGKACVYRLYDYQLVLKSLKNRKDIECEEIPWGTFNVVEKFSHSFIYGRWIPCRPEHLPDEKVDGLISELPIALLNALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFMKDGSILVVCPAILRYSW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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