当前解析结果
SmilChr02G004832| 统一新 Gene ID | SmilChr02G004832 |
|---|---|
| 名称 | SmilChr02G004832 |
| 描述 | SNAP25 homologous protein SNAP33-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70431909 - 70435197 / - |
| NCBI Gene ID | LOC131008827 |
|---|---|
| GeneID | 131008827 |
| locus_tag | - |
| NCBI Name | LOC131008827 |
| 原始查询 | SmilChr02G004832 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SNAP25 homologous protein SNAP33-like |
| 产物 | SNAP25 homologous protein SNAP33-like |
| Arabidopsis | AT5G61210 (SNAP33)soluble N-ethylmaleimide-sensitive factor adaptor protein 33 [Source:NCBI gene (formerly Entrezgene);Acc:836242] identity=58.8; qcov=1.01; evalue=7.66e-115; confidence=high |
| Rice | Os02g0437200 (OsSNAP32)- identity=55; qcov=0.925; evalue=1.5e-97; confidence=high |
| GO | GO:0005484 (SNAP receptor activity); GO:0005886 (plasma membrane); GO:0031201 (SNARE complex) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008827 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057791870.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057791870.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791870.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057791870.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057791870.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70432381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr2:70432705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B95,C14 |
Chr2:70433745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B34,B64,C5,C74 |
Chr2:70433797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr2:70433818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B111,B122,B84,C22 |
Chr2:70433991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B84 |
Chr2:70434038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:70434078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。