Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004833`

染色体: Chr02 坐标: 70444929-70446894 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004833`
名称	SmilChr02G004833
描述	zinc finger protein ZAT1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70444929 - 70446894 / `-`

ID 对照

NCBI Gene ID	`LOC131008828`
GeneID	`131008828`
locus_tag	`-`
NCBI Name	`LOC131008828`
原始查询	`SmilChr02G004833`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein ZAT1-like
产物	zinc finger protein ZAT1-like
Arabidopsis	`AT2G45120` (AT2G45120) C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:819119] identity=48.3; qcov=0.317; evalue=2.17e-27; confidence=low
Rice	`Os10g0555300` - identity=30.9; qcov=1; evalue=8.7e-30; confidence=low
GO	-
KEGG	-
Pfam	PF00096 (zf-C2H2); PF12874 (zf-met); PF13894 (zf-C2H2_4); PF13912 (zf-C2H2_6)
InterPro	-
eggNOG	-
NR	GeneID:131008828

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791871.1`
2	Chromosome	染色体	0.00000	`XP_057791871.1`
3	Centromere	着丝粒	0.00000	`XP_057791871.1`
4	Chromatin	染色质	0.00000	`XP_057791871.1`
5	Telomere	端粒	0.00000	`XP_057791871.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70445103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr2:70445226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:70445262`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B138
`Chr2:70445262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:70445270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:70445272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B74,C79,C87
`Chr2:70445290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:70445294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C41,C46,C84
`Chr2:70445304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C41,C46,C84
`Chr2:70445350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B55
`Chr2:70445352`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	A4,A8,B24,B26,B64,C24,C26
`Chr2:70445377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,B25,C41,C46,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791871.1

378 aa

189

378

zf-C2H2_6

zf-met

zf-C2H2

zf-C2H2_6

zf-C2H2_4

zf-C2H2_6

PF13912 zf-C2H2_6 6-28 aa PF12874 zf-met 7-28 aa PF00096 zf-C2H2 61-79 aa PF13912 zf-C2H2_6 61-82 aa PF13912 zf-C2H2_6 248-272 aa PF13894 zf-C2H2_4 303-325 aa PF13912 zf-C2H2_6 303-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791871.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	6	28	1.6e-39	133.8	C2H2-type zinc finger
`XP_057791871.1`	Pfam	`PF12874`	zf-met	Domain	7	28	3.6e-06	27.8	Zinc-finger of C2H2 type
`XP_057791871.1`	Pfam	`PF00096`	zf-C2H2	Domain	61	79	1.9e-08	35.0	Zinc finger, C2H2 type
`XP_057791871.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	61	82	1.6e-39	133.8	C2H2-type zinc finger
`XP_057791871.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	248	272	1.6e-39	133.8	C2H2-type zinc finger
`XP_057791871.1`	Pfam	`PF13894`	zf-C2H2_4	Domain	303	325	1.1e-15	57.5	C2H2-type zinc finger
`XP_057791871.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	303	326	1.6e-39	133.8	C2H2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935888.1
GGAAGAAGCAGAAGAAGAAGAAGTCCAAAAGAATAACCGCCGAAAACAAAGAGTGGAAATCCCATGTTTTCACTCGGCATTGTGGGCTTCCTTAATATCAAGACAAAGAAAAGAATTGTTATTTTAGGCTGTTAAATTAATTACTTCTCTAAATCTCAATTTCCAAACCGTTGGATCATTCCCTCCCGAGAGATCTGGGCCGTCCGATTAGGGTGGTGTGGGATTCTCAGTTGGAGTACATGTGCTGCTATCTTTCCTTT...

CDS

1 records

下载 CDS FASTA

LOC131008828
ATGATGGAGAAAGAGCACATCTGCAAGCTGTGCAACAAGAGCTTCCCCTGTGGGAGATCATTGGGAGGCCACATGAGGTCTCACCTGATCAACACTCCGACACCGGGTCATCCCGGCAACGACGAAAGCCCCCCGAAGAAGAAGAAGAATGACAAACCAAACCCAACTCCAAACAAGGCCTGCAAGGAATGTGGGAAGGCCTTCCAATCATGGAAGGCCCTGTTTGGCCACATGAAATGCCACTCTGCAAATCAAGATTC...

Protein

1 records

下载 Protein FASTA

XP_057791871.1
MMEKEHICKLCNKSFPCGRSLGGHMRSHLINTPTPGHPGNDESPPKKKKNDKPNPTPNKACKECGKAFQSWKALFGHMKCHSANQDSGKPIIMDSQSDNEATPPPKRKRSDRIITRYNSASIITNSSSSLTIATTTDDNDDEEDYDHNKDHGDDDDEHREQEEVALSLIILSRDKGSWEPTSKSIGVQCLQKLKKPRVEAKTRKLESLNTEGEVGCDDEVEVNSPKNVNKKSFRKEREGSRERNSRKFRCSMCKKAFQSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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