Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004842`

染色体: Chr02 坐标: 70546838-70550264 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004842`
名称	SmilChr02G004842
描述	biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70546838 - 70550264 / `+`

ID 对照

NCBI Gene ID	`LOC131008839`
GeneID	`131008839`
locus_tag	`-`
NCBI Name	`LOC131008839`
原始查询	`SmilChr02G004842`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like
产物	biotin carboxyl carrier protein of acetyl-CoA carboxylase 2%2C chloroplastic-like
Arabidopsis	`AT5G15530` (BCCP2) biotin carboxyl carrier protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:831406] identity=51.5; qcov=1.03; evalue=4.14e-74; confidence=high
Rice	`-` -
GO	GO:0003989 (acetyl-CoA carboxylase activity); GO:0006633 (fatty acid biosynthetic process); GO:0009317 (acetyl-CoA carboxylase complex)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00364 (Biotin_lipoyl)
InterPro	-
eggNOG	-
NR	GeneID:131008839

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057791893.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057791893.1`
3	Nucleus	细胞核	0.00000	`XP_057791893.1`
4	Chromosome	染色体	0.00000	`XP_057791893.1`
5	Centromere	着丝粒	0.00000	`XP_057791893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70547211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr2:70547233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:70548087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B134,C79
`Chr2:70548314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:70548447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B32,B69,D6
`Chr2:70548485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B133,B31,C25
`Chr2:70548564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B74,C53,C87
`Chr2:70548579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:70548624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B32,B69,D6
`Chr2:70549343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B74,C53,C87
`Chr2:70549376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,D11
`Chr2:70549412`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B113,B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791893.1

278 aa

139

278

Biotin_lipoyl

PF00364 Biotin_lipoyl 179-247 aa

XP_057791894.1

253 aa

126

253

Biotin_lipoyl

PF00364 Biotin_lipoyl 179-251 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791893.1`	Pfam	`PF00364`	Biotin_lipoyl	Domain	179	247	2.9e-23	82.2	Biotin-requiring enzyme
`XP_057791894.1`	Pfam	`PF00364`	Biotin_lipoyl	Domain	179	251	3.5e-25	88.3	Biotin-requiring enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935911.1
AGACTGTCCAGTGAAAATTATTATTAAACGATACAATCAATACATTGTTGGTTTAACCAAATGATCACAGAGCTCAAAAACGCTGTCGTTTAATCCACCTCGTCCATATCGCCCTCCTTCCTCTCCACCGTTATTCTGTTTCTTGTGCTAATTTTACTTCAAATTTATCGCCCATTTTTTCTCTACAAAAACCTCCAAACTCTTCCCAGAAATCCACTTCCCTCTCTCACACACACGCGCGCAATCCTAACTCCATCTGC...

XM_057935910.1
TGGTTTAACCAAATGATCACAGAGCTCAAAAACGCTGTCGTTTAATCCACCTCGTCCATATCGCCCTCCTTCCTCTCCACCGTTATTCTGTTTCTTGTGCTAATTTTACTTCAAATTTATCGCCCATTTTTTCTCTACAAAAACCTCCAAACTCTTCCCAGAAATCCACTTCCCTCTCTCACACACACGCGCGCAATCCTAACTCCATCTGCAATTCTGCACTATCCTGCAGAAATTCATAATAAAATGGCTTCTTTCAC...

CDS

2 records

下载 CDS FASTA

LOC131008839
ATGGCTTCTTTCACCGTTCCATGCCCGAAGGTTTCGCCGCCGCTGGCTGCTTCATCGCAGCATGTTGCTTTGTTCCCGCGATCCGGATGCCGAATGCTCCCGTTCGCTAAAGTCAAGGGGCTTAGCCGGAACCAATCTGATGATTTTAAGGTGTCCGCACAGCTAAACGAGGTCGCTGTCGAAAAAGCATCACTTCTGACAGAACGGCTCAAAGAATCGAAAAGCCAATATGAAATTCCAGATGCAGAATCGGTTTCAGC...

Protein

2 records

下载 Protein FASTA

XP_057791893.1
MASFTVPCPKVSPPLAASSQHVALFPRSGCRMLPFAKVKGLSRNQSDDFKVSAQLNEVAVEKASLLTERLKESKSQYEIPDAESVSAFMNQVSDLIKLVDSRDIVELQLKQLDCELVIRKKEALPQPSTSAPVFYAPPPTAQATLSPPPTTNVPAPASSTPSAPALPAPAKPKSSHPPFKCPMAGNFYRSPAPGAPPFVKVGDKVQKGQVICIIEAMKLMNDIEADQSGTVVEILADDGKPVSVDTVSLLLFLSYFIFSF...

XP_057791894.1
MASFTVPCPKVSPPLAASSQHVALFPRSGCRMLPFAKVKGLSRNQSDDFKVSAQLNEVAVEKASLLTERLKESKSQYEIPDAESVSAFMNQVSDLIKLVDSRDIVELQLKQLDCELVIRKKEALPQPSTSAPVFYAPPPTAQATLSPPPTTNVPAPASSTPSAPALPAPAKPKSSHPPFKCPMAGNFYRSPAPGAPPFVKVGDKVQKGQVICIIEAMKLMNDIEADQSGTVVEILADDGKPVSVDTPLFIIEP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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