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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004843

染色体: Chr02 坐标: 70552265-70557967 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004843
名称SmilChr02G004843
描述pentatricopeptide repeat-containing protein At2g26790, mitochondrial
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向70552265 - 70557967 / -

ID 对照

NCBI Gene IDLOC131008840
GeneID131008840
locus_tag-
NCBI NameLOC131008840
原始查询SmilChr02G004843

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g26790, mitochondrial
产物pentatricopeptide repeat-containing protein At2g26790%2C mitochondrial
ArabidopsisAT2G26790 (AT2G26790)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817220]
identity=40; qcov=0.988; evalue=0; confidence=medium
RiceOs11g0659400
-
identity=44.2; qcov=0.647; evalue=4.26e-148; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131008840

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057791895.1
2 Chloroplast 叶绿体 0.20000 XP_057791895.1
3 Nucleus 细胞核 0.00000 XP_057791895.1
4 Chromosome 染色体 0.00000 XP_057791895.1
5 Centromere 着丝粒 0.00000 XP_057791895.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:70555599 G A EMS_canonical_SNV CDS_variant 2 A24,C12
Chr2:70555690 G A EMS_canonical_SNV CDS_variant 1 B107
Chr2:70555775 C T EMS_canonical_SNV CDS_variant 3 B41,B73,C17
Chr2:70555890 G A EMS_canonical_SNV CDS_variant 1 C18
Chr2:70556086 C T EMS_canonical_SNV CDS_variant 2 C1,D11
Chr2:70556349 C T EMS_canonical_SNV CDS_variant 1 B35
Chr2:70556356 G A EMS_canonical_SNV CDS_variant 3 A9,B6,C63
Chr2:70556645 G A EMS_canonical_SNV CDS_variant 2 B113,B124
Chr2:70556696 G A EMS_canonical_SNV CDS_variant 1 B84
Chr2:70556727 C T EMS_canonical_SNV CDS_variant 1 C73
Chr2:70556772 G A EMS_canonical_SNV CDS_variant 5 B22,B60,B79,B99,C30
Chr2:70556899 C T EMS_canonical_SNV CDS_variant 1 C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791895.1
818 aa
N
1
409
818
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_2
PPR
PPR_1
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 190-239 aa PF01535 PPR 194-223 aa PF17177 PPR_long 205-311 aa PF23276 TPR_24 205-316 aa PF13812 PPR_3 214-265 aa PF12854 PPR_1 222-254 aa PF01535 PPR 228-256 aa PF13041 PPR_2 235-273 aa PF23276 TPR_24 275-333 aa PF13812 PPR_3 284-342 aa PF13041 PPR_2 296-343 aa PF01535 PPR 299-328 aa PF12854 PPR_1 327-359 aa PF23276 TPR_24 332-427 aa PF01535 PPR 333-363 aa PF13812 PPR_3 393-445 aa PF12854 PPR_1 396-429 aa PF13041 PPR_2 401-448 aa PF01535 PPR 403-431 aa PF12854 PPR_1 433-463 aa PF13041 PPR_2 435-483 aa PF01535 PPR 438-468 aa PF13812 PPR_3 459-515 aa PF13041 PPR_2 471-518 aa PF01535 PPR 473-503 aa PF12854 PPR_1 502-530 aa PF01535 PPR 508-537 aa PF01535 PPR 541-569 aa PF01535 PPR 611-639 aa PF13812 PPR_3 633-685 aa PF12854 PPR_1 637-670 aa PF13041 PPR_2 641-690 aa PF01535 PPR 644-674 aa PF17177 PPR_long 714-804 aa PF13812 PPR_3 716-761 aa PF12854 PPR_1 723-753 aa PF13041 PPR_2 726-775 aa PF01535 PPR 730-759 aa PF13812 PPR_3 749-795 aa PF12854 PPR_1 758-790 aa PF13041 PPR_2 761-807 aa PF01535 PPR 764-794 aa
XP_057791896.1
818 aa
N
1
409
818
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_2
PPR
PPR_1
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 190-239 aa PF01535 PPR 194-223 aa PF17177 PPR_long 205-311 aa PF23276 TPR_24 205-316 aa PF13812 PPR_3 214-265 aa PF12854 PPR_1 222-254 aa PF01535 PPR 228-256 aa PF13041 PPR_2 235-273 aa PF23276 TPR_24 275-333 aa PF13812 PPR_3 284-342 aa PF13041 PPR_2 296-343 aa PF01535 PPR 299-328 aa PF12854 PPR_1 327-359 aa PF23276 TPR_24 332-427 aa PF01535 PPR 333-363 aa PF13812 PPR_3 393-445 aa PF12854 PPR_1 396-429 aa PF13041 PPR_2 401-448 aa PF01535 PPR 403-431 aa PF12854 PPR_1 433-463 aa PF13041 PPR_2 435-483 aa PF01535 PPR 438-468 aa PF13812 PPR_3 459-515 aa PF13041 PPR_2 471-518 aa PF01535 PPR 473-503 aa PF12854 PPR_1 502-530 aa PF01535 PPR 508-537 aa PF01535 PPR 541-569 aa PF01535 PPR 611-639 aa PF13812 PPR_3 633-685 aa PF12854 PPR_1 637-670 aa PF13041 PPR_2 641-690 aa PF01535 PPR 644-674 aa PF17177 PPR_long 714-804 aa PF13812 PPR_3 716-761 aa PF12854 PPR_1 723-753 aa PF13041 PPR_2 726-775 aa PF01535 PPR 730-759 aa PF13812 PPR_3 749-795 aa PF12854 PPR_1 758-790 aa PF13041 PPR_2 761-807 aa PF01535 PPR 764-794 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 190 239 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 194 223 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF17177 PPR_long Repeat 205 311 1.5e-33 116.7 Pentacotripeptide-repeat region of PRORP
XP_057791895.1 Pfam PF23276 TPR_24 Repeat 205 316 1.8e-45 154.9 Pentatricopeptide repeat-containing protein
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 214 265 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 222 254 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF01535 PPR Repeat 228 256 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 235 273 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF23276 TPR_24 Repeat 275 333 1.8e-45 154.9 Pentatricopeptide repeat-containing protein
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 284 342 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 296 343 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 299 328 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 327 359 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF23276 TPR_24 Repeat 332 427 1.8e-45 154.9 Pentatricopeptide repeat-containing protein
XP_057791895.1 Pfam PF01535 PPR Repeat 333 363 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 393 445 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 396 429 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 401 448 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 403 431 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 433 463 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 435 483 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 438 468 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 459 515 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 471 518 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 473 503 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 502 530 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF01535 PPR Repeat 508 537 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF01535 PPR Repeat 541 569 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF01535 PPR Repeat 611 639 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 633 685 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 637 670 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 641 690 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 644 674 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF17177 PPR_long Repeat 714 804 1.5e-33 116.7 Pentacotripeptide-repeat region of PRORP
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 716 761 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 723 753 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 726 775 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 730 759 1.3e-101 326.7 PPR repeat
XP_057791895.1 Pfam PF13812 PPR_3 Repeat 749 795 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791895.1 Pfam PF12854 PPR_1 Repeat 758 790 1.8e-121 396.2 PPR repeat
XP_057791895.1 Pfam PF13041 PPR_2 Repeat 761 807 1.8e-132 432.0 PPR repeat family
XP_057791895.1 Pfam PF01535 PPR Repeat 764 794 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 190 239 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 194 223 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF17177 PPR_long Repeat 205 311 1.5e-33 116.7 Pentacotripeptide-repeat region of PRORP
XP_057791896.1 Pfam PF23276 TPR_24 Repeat 205 316 1.8e-45 154.9 Pentatricopeptide repeat-containing protein
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 214 265 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 222 254 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF01535 PPR Repeat 228 256 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 235 273 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF23276 TPR_24 Repeat 275 333 1.8e-45 154.9 Pentatricopeptide repeat-containing protein
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 284 342 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 296 343 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 299 328 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 327 359 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF23276 TPR_24 Repeat 332 427 1.8e-45 154.9 Pentatricopeptide repeat-containing protein
XP_057791896.1 Pfam PF01535 PPR Repeat 333 363 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 393 445 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 396 429 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 401 448 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 403 431 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 433 463 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 435 483 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 438 468 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 459 515 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 471 518 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 473 503 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 502 530 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF01535 PPR Repeat 508 537 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF01535 PPR Repeat 541 569 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF01535 PPR Repeat 611 639 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 633 685 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 637 670 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 641 690 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 644 674 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF17177 PPR_long Repeat 714 804 1.5e-33 116.7 Pentacotripeptide-repeat region of PRORP
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 716 761 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 723 753 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 726 775 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 730 759 1.3e-101 326.7 PPR repeat
XP_057791896.1 Pfam PF13812 PPR_3 Repeat 749 795 5.1e-68 225.8 Pentatricopeptide repeat domain
XP_057791896.1 Pfam PF12854 PPR_1 Repeat 758 790 1.8e-121 396.2 PPR repeat
XP_057791896.1 Pfam PF13041 PPR_2 Repeat 761 807 1.8e-132 432.0 PPR repeat family
XP_057791896.1 Pfam PF01535 PPR Repeat 764 794 1.3e-101 326.7 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057935912.1
TAAAAAAAATAAAAATGAATAAGGTGCGCCGCCGACTGCTAATGGCGGAAAGGGTTTAAAGCTCAAGGGTTTTACATTCCCGCCGTTACCTCTCTCTCTCAAAATCTTCGTCGTCCCAAAACTACCACCTTATCTCAATTCGCTGTTGTTAGAATTACTGAAGCAAATAAGCAATTTCTTCAGCAAAAGCTTTTATGTGCGAAGAAATTGAAATTGTTCGATGCTGGTTTCTTCAATCAGGTCAGCATCTCGCGCAAATC...
XM_057935913.1
TAAAAAAAATAAAAATGAATAAGGTGCGCCGCCGACTGCTAATGGCGGAAAGGGTTTAAAGCTCAAGGGTTTTACATTCCCGCCGTTACCTCTCTCTCTCAAAATCTTCGTCGTCCCAAAACTACCACCTTATCTCAATTCGCTGTTGTTAGAATTACTGAAGCAAATAAGCAATTTCTTCAGCAAAAGCTTTTATGTGCGAAGAAATTGAAATTGTTCGATGCTGGTTTCTTCAATCAGGTCAGCATCTCGCGCAAATC...

CDS

2 records

下载 CDS FASTA
LOC131008840
ATGCTGGTTTCTTCAATCAGGTCAGCATCTCGCGCAAATCTCTTTAGATATCTCCAAATTATTCGATCACAATCAGTTCCGTCGCTCGCTCATTTCACTCCTTACTTTTCGGATTCGGCTTCCGACGACCTGAAATCCAATGATGTTTCTGTAACAAATTGCGGAGACAATGAAAATGTATTGGAATTGAATTCGCATGGGGTCGTTCAGATTCTGCAAAATATGAAATTGGAACCGGTTTCTGCATTATCCTTTTTTAA...
LOC131008840
ATGCTGGTTTCTTCAATCAGGTCAGCATCTCGCGCAAATCTCTTTAGATATCTCCAAATTATTCGATCACAATCAGTTCCGTCGCTCGCTCATTTCACTCCTTACTTTTCGGATTCGGCTTCCGACGACCTGAAATCCAATGATGTTTCTGTAACAAATTGCGGAGACAATGAAAATGTATTGGAATTGAATTCGCATGGGGTCGTTCAGATTCTGCAAAATATGAAATTGGAACCGGTTTCTGCATTATCCTTTTTTAA...

Protein

2 records

下载 Protein FASTA
XP_057791895.1
MLVSSIRSASRANLFRYLQIIRSQSVPSLAHFTPYFSDSASDDLKSNDVSVTNCGDNENVLELNSHGVVQILQNMKLEPVSALSFFNQLKGKGFQHDTRSYLAMIKVLCYWRMDRKLDCLFTDIIINLKSGDFCFEVSELLDAMAEELKADGPSSLLRAFDALIKSYASLEMFDEAIDTLFATRRHGVGPCLLSCNFLMNRLVGHGKVDSAVAIYKQLKNIGVEPNIYTYGIAVKAYCRMGCLEEAAKVFLEMEEAEVVP...
XP_057791896.1
MLVSSIRSASRANLFRYLQIIRSQSVPSLAHFTPYFSDSASDDLKSNDVSVTNCGDNENVLELNSHGVVQILQNMKLEPVSALSFFNQLKGKGFQHDTRSYLAMIKVLCYWRMDRKLDCLFTDIIINLKSGDFCFEVSELLDAMAEELKADGPSSLLRAFDALIKSYASLEMFDEAIDTLFATRRHGVGPCLLSCNFLMNRLVGHGKVDSAVAIYKQLKNIGVEPNIYTYGIAVKAYCRMGCLEEAAKVFLEMEEAEVVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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