Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004845`

染色体: Chr02 坐标: 70575749-70587152 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004845`
名称	SmilChr02G004845
描述	uncharacterized SmilChr02G004845
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70575749 - 70587152 / `-`

ID 对照

NCBI Gene ID	`LOC131008842`
GeneID	`131008842`
locus_tag	`-`
NCBI Name	`LOC131008842`
原始查询	`SmilChr02G004845`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	dentin sialophosphoprotein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830688]; symbol=AT5G07940; hit=AT5G07940; species=arabidopsis; confidence=weak
产物	dentin sialophosphoprotein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830688]; symbol=AT5G07940; hit=AT5G07940; species=arabidopsis; confidence=weak
Arabidopsis	`AT5G07940` (AT5G07940) dentin sialophosphoprotein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830688] identity=45; qcov=0.195; evalue=4.23e-73; confidence=weak
Rice	`Os03g0213300` - identity=29.7; qcov=0.391; evalue=8.47e-65; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131008842

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791901.1`
2	Nucleoplasm	核质	0.20000	`XP_057791901.1`
3	Chromosome	染色体	0.00000	`XP_057791901.1`
4	Centromere	着丝粒	0.00000	`XP_057791901.1`
5	Chromatin	染色质	0.00000	`XP_057791901.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70576495`	`CTA`	`C`	2bp_deletion	frameshift_variant	1	B35
`Chr2:70576495`	`CTA`	`C`	2bp_deletion	CDS_variant	1	B35
`Chr2:70577223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr2:70577500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:70577524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:70577607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:70577996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:70578310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B130,C30
`Chr2:70578368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr2:70578369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr2:70578370`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B38
`Chr2:70578370`	`TC`	`T`	1bp_deletion	CDS_variant	1	B38

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057935920.1
TTTCACATACTTTATCTCTCTCTCACAGCGAAACACTCCTCTCTCTCTCTCTAGAGCTCCCCGTATTTCTGCTCGCCGATTCAAAACCCTAGAACAAAACTTATCTATATTTGAAGATCGATTTCCATTTCCATTTTTCTGTCGTCACACACATCTCAATTTTAATCTGAAATTTTAGGTTAACCATCCATGCCTGGCAACGAACTTGGAGATAGGGTTCACAATTTCTTTGCACAAGACAATTCATCACAGGGGCAGCA...

XM_057935921.1
ACATACTTTATCTCTCTCTCACAGCGAAACACTCCTCTCTCTCTCTCTAGAGCTCCCCGTATTTCTGCTCGCCGATTCAAAACCCTAGAACAAAACTTATCTATATTTGAAGATCGATTTCCATTTCCATTTTTCTGTCGTCACACACATCTCAATTTTAATTATTCTTATTCAGGAGGCTGTCAGTGTCTGAGAAGGTGGCACAGGATTGATGTTAGTTTTCAGGGGAATTCTGAAATTTTAGGTTAACCATCCATGCC...

CDS

5 records

下载 CDS FASTA

LOC131008842
ATGCCTGGCAACGAACTTGGAGATAGGGTTCACAATTTCTTTGCACAAGACAATTCATCACAGGGGCAGCATCAATCACATGGTTTGGAAGGAAACTGGCCAGTGCCTAACAACAATTTTTGGGTTGGCAGCCCGAGAGCTGTTGATGTGCTGAATTCAAGCACGAAAAATTACTCTGGGCAAAACCCAGATAGAGGGCAGTCTAGCTATCCTGTTCATGCAGCTCATGGCTTGAATTTTTCTCAATCAAATCTGAGGCC...

LOC131008842
ATGCCTGGCAACGAACTTGGAGATAGGGTTCACAATTTCTTTGCACAAGACAATTCATCACAGGGGCAGCATCAATCACATGGTTTGGAAGGAAACTGGCCAGTGCCTAACAACAATTTTTGGGTTGGCAGCCCGAGAGCTGTTGATGTGCTGAATTCAAGCACGAAAAATTACTCTGGGCAAAACCCAGCGGAAATAGATAGAGGGCAGTCTAGCTATCCTGTTCATGCAGCTCATGGCTTGAATTTTTCTCAATCAAA...

Protein

5 records

下载 Protein FASTA

XP_057791901.1
MPGNELGDRVHNFFAQDNSSQGQHQSHGLEGNWPVPNNNFWVGSPRAVDVLNSSTKNYSGQNPAEIDRGQSSYPVHAAHGLNFSQSNLRPDFSRNQPLNEQQYSNGYMYGNQYSQGRQNEANFRELDAYSDQRHMLASRGLPGHELQRISGHEQLPKASDRSGTSVSPVSFDLFGGQQQMNHQQASMLQALQRQQSGLNDVQQLQQQFMIRKMEELQRQQQLQQLDSRPQNPINQVPQVTKQASGSQSSLFNGTPNSDAL...

XP_057791902.1
MPGNELGDRVHNFFAQDNSSQGQHQSHGLEGNWPVPNNNFWVGSPRAVDVLNSSTKNYSGQNPAEIDRGQSSYPVHAAHGLNFSQSNLRPDFSRNQPLNEQQYSNGYMYGNQYSQGRQNEANFRELDAYSDQRHMLASRGLPGHELQRISGHEQLPKASDRSGTSVSPVSFDLFGGQQQMNHQQASMLQALQRQQSGLNDVQQLQQQFMIRKMEELQRQQQLQQLDSRPQNPINQVPQVTKQASGSQSSLFNGTPNSDAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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