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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004855

染色体: Chr02 坐标: 70702516-70706242 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004855
名称SmilChr02G004855
描述uncharacterized SmilChr02G004855
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向70702516 - 70706242 / -

ID 对照

NCBI Gene IDLOC131008853
GeneID131008853
locus_tag-
NCBI NameLOC131008853
原始查询SmilChr02G004855

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:843514]; symbol=AT1G71840; hit=AT1G71840; species=arabidopsis; confidence=high
产物transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:843514]; symbol=AT1G71840; hit=AT1G71840; species=arabidopsis; confidence=high
ArabidopsisAT1G71840 (AT1G71840)
transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:843514]
identity=66.8; qcov=0.927; evalue=8.61e-151; confidence=high
RiceOs03g0685600 (OsWD40-82)
-
identity=52.3; qcov=0.953; evalue=2.16e-109; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF00400 (WD40); PF12894 (ANAPC4_WD40)
InterPro-
eggNOG-
NRGeneID:131008853

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057791928.1
2 Cytoplasm 细胞质 1.00000 XP_057791928.1
3 Chromosome 染色体 0.00000 XP_057791928.1
4 Centromere 着丝粒 0.00000 XP_057791928.1
5 Chromatin 染色质 0.00000 XP_057791928.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:70702768 G A EMS_canonical_SNV CDS_variant 1 B55
Chr2:70702804 C T EMS_canonical_SNV CDS_variant 3 B107,B98,D11
Chr2:70702867 G A EMS_canonical_SNV CDS_variant 1 B1
Chr2:70703006 G GA 1bp_insertion frameshift_variant 7 A3,B119,B140,B2,B8,C36,C83
Chr2:70703031 ATT A 2bp_deletion frameshift_variant 8 A15,B103,B54,B60,B74,B79,C16,C87
Chr2:70703094 C T EMS_canonical_SNV CDS_variant 4 B22,B99,C7,C75
Chr2:70703950 G A EMS_canonical_SNV CDS_variant 1 B55
Chr2:70704016 C T EMS_canonical_SNV CDS_variant 1 B107
Chr2:70704022 G A EMS_canonical_SNV CDS_variant 1 B69
Chr2:70704303 G A EMS_canonical_SNV CDS_variant 3 B93,C82,D1
Chr2:70705420 C T EMS_canonical_SNV CDS_variant 2 B105,B79
Chr2:70705571 G A EMS_canonical_SNV CDS_variant 3 B30,B65,B70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791928.1
399 aa
N
1
200
399
WD40
ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
WD40
WD40
WD40
C
PF00400 WD40 57-93 aa PF12894 ANAPC4_WD40 91-142 aa PF00400 WD40 103-136 aa PF00400 WD40 142-178 aa PF12894 ANAPC4_WD40 157-246 aa PF00400 WD40 185-221 aa PF00400 WD40 228-264 aa PF12894 ANAPC4_WD40 237-289 aa PF00400 WD40 270-312 aa PF00400 WD40 321-352 aa PF00400 WD40 356-393 aa
XP_057791929.1
399 aa
N
1
200
399
WD40
ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
WD40
WD40
WD40
C
PF00400 WD40 57-93 aa PF12894 ANAPC4_WD40 91-142 aa PF00400 WD40 103-136 aa PF00400 WD40 142-178 aa PF12894 ANAPC4_WD40 157-246 aa PF00400 WD40 185-221 aa PF00400 WD40 228-264 aa PF12894 ANAPC4_WD40 237-289 aa PF00400 WD40 270-312 aa PF00400 WD40 321-352 aa PF00400 WD40 356-393 aa
XP_057791930.1
341 aa
N
1
170
341
WD40
ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
WD40
WD40
ANAPC4_WD40
WD40
C
PF00400 WD40 57-93 aa PF12894 ANAPC4_WD40 90-143 aa PF00400 WD40 103-136 aa PF00400 WD40 142-178 aa PF12894 ANAPC4_WD40 157-245 aa PF00400 WD40 185-221 aa PF00400 WD40 228-264 aa PF12894 ANAPC4_WD40 237-289 aa PF00400 WD40 270-312 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057791928.1 Pfam PF00400 WD40 Repeat 57 93 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF12894 ANAPC4_WD40 Repeat 91 142 2.4e-25 89.3 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791928.1 Pfam PF00400 WD40 Repeat 103 136 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF00400 WD40 Repeat 142 178 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF12894 ANAPC4_WD40 Repeat 157 246 2.4e-25 89.3 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791928.1 Pfam PF00400 WD40 Repeat 185 221 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF00400 WD40 Repeat 228 264 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF12894 ANAPC4_WD40 Repeat 237 289 2.4e-25 89.3 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791928.1 Pfam PF00400 WD40 Repeat 270 312 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF00400 WD40 Repeat 321 352 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791928.1 Pfam PF00400 WD40 Repeat 356 393 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF00400 WD40 Repeat 57 93 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF12894 ANAPC4_WD40 Repeat 91 142 2.4e-25 89.3 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791929.1 Pfam PF00400 WD40 Repeat 103 136 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF00400 WD40 Repeat 142 178 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF12894 ANAPC4_WD40 Repeat 157 246 2.4e-25 89.3 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791929.1 Pfam PF00400 WD40 Repeat 185 221 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF00400 WD40 Repeat 228 264 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF12894 ANAPC4_WD40 Repeat 237 289 2.4e-25 89.3 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791929.1 Pfam PF00400 WD40 Repeat 270 312 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF00400 WD40 Repeat 321 352 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791929.1 Pfam PF00400 WD40 Repeat 356 393 7.1e-61 200.8 WD domain, G-beta repeat
XP_057791930.1 Pfam PF00400 WD40 Repeat 57 93 5.1e-45 150.7 WD domain, G-beta repeat
XP_057791930.1 Pfam PF12894 ANAPC4_WD40 Repeat 90 143 2.4e-19 70.1 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791930.1 Pfam PF00400 WD40 Repeat 103 136 5.1e-45 150.7 WD domain, G-beta repeat
XP_057791930.1 Pfam PF00400 WD40 Repeat 142 178 5.1e-45 150.7 WD domain, G-beta repeat
XP_057791930.1 Pfam PF12894 ANAPC4_WD40 Repeat 157 245 2.4e-19 70.1 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791930.1 Pfam PF00400 WD40 Repeat 185 221 5.1e-45 150.7 WD domain, G-beta repeat
XP_057791930.1 Pfam PF00400 WD40 Repeat 228 264 5.1e-45 150.7 WD domain, G-beta repeat
XP_057791930.1 Pfam PF12894 ANAPC4_WD40 Repeat 237 289 2.4e-19 70.1 Anaphase-promoting complex subunit 4 WD40 domain
XP_057791930.1 Pfam PF00400 WD40 Repeat 270 312 5.1e-45 150.7 WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057935947.1
AAAATGAATTAAAGAATATCAATAGTGGAAATATCAAATTCCGGAAGAAGTAAAATCCCCCGAGAACTTCAACCCCTCTTCCCCAAAGAACCAAAACCCGCCGCCGCTTTTGCGTCTCCCCACAACCCGCAACTCGTTCGCCACCGCCTCTCGCCGCTAAAAATGAATGTGCCATCTCCAGTCCACGACGACGACAAGGATAATGGGGAGCAGACTTTCATAGATGAAAGTGATATAATTAACGAGTATGATGTTGATGA...
XM_057935946.1
TATCAATAGTGGAAATATCAAATTCCGGAAGAAGTAAAATCCCCCGAGAACTTCAACCCCTCTTCCCCAAAGAACCAAAACCCGCCGCCGCTTTTGCGTCTCCCCACAACCCGCAACTCGTTCGCCACCGCCTCTCGCCGCTAAGAAATGAATGTGCCATCTCCAGTCCACGACGACGACAAGGATAATGGGGAGCAGACTTTCATAGATGAAAGTGATATAATTAACGAGTATGATGTTGATGAAGAAGAACTCCCTGA...

CDS

3 records

下载 CDS FASTA
LOC131008853
ATGAATGTGCCATCTCCAGTCCACGACGACGACAAGGATAATGGGGAGCAGACTTTCATAGATGAAAGTGATATAATTAACGAGTATGATGTTGATGAAGAAGAACTCCCTGATGCGGATGAGGTGGGTGGCTCTGATGGAGAAGAAGAATTTGATGTAGTTGATGATTCTGTACATATATTCACTGGTCACACAGGTGAACTGTACACCGCAACATGTAGTCCAACAGATGCTACTCTAGTGGCAACTGGAGGCGGAGA...
LOC131008853
ATGAATGTGCCATCTCCAGTCCACGACGACGACAAGGATAATGGGGAGCAGACTTTCATAGATGAAAGTGATATAATTAACGAGTATGATGTTGATGAAGAAGAACTCCCTGATGCGGATGAGGTGGGTGGCTCTGATGGAGAAGAAGAATTTGATGTAGTTGATGATTCTGTACATATATTCACTGGTCACACAGGTGAACTGTACACCGCAACATGTAGTCCAACAGATGCTACTCTAGTGGCAACTGGAGGCGGAGA...

Protein

3 records

下载 Protein FASTA
XP_057791928.1
MNVPSPVHDDDKDNGEQTFIDESDIINEYDVDEEELPDADEVGGSDGEEEFDVVDDSVHIFTGHTGELYTATCSPTDATLVATGGGDDKGFLWRINQGDWAFELQGHQDSVSSLSFSMDGQLIASGSLDGVVKVWDIANGDLKCTLEGPNGGIEWVRWHPKGHLVLAGAEDSSIWMWNADREGAFLNVFTGHGGSVTCGDFTPDGKTICSGSDDATMKIWNPKNAEIIHVVRGHPYHTEGITCLTISSDSTLVLTGSSDG...
XP_057791929.1
MNVPSPVHDDDKDNGEQTFIDESDIINEYDVDEEELPDADEVGGSDGEEEFDVVDDSVHIFTGHTGELYTATCSPTDATLVATGGGDDKGFLWRINQGDWAFELQGHQDSVSSLSFSMDGQLIASGSLDGVVKVWDIANGDLKCTLEGPNGGIEWVRWHPKGHLVLAGAEDSSIWMWNADREGAFLNVFTGHGGSVTCGDFTPDGKTICSGSDDATMKIWNPKNAEIIHVVRGHPYHTEGITCLTISSDSTLVLTGSSDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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