Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004856`

染色体: Chr02 坐标: 70707559-70709347 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004856`
名称	SmilChr02G004856
描述	uncharacterized SmilChr02G004856
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70707559 - 70709347 / `-`

ID 对照

NCBI Gene ID	`LOC131008854`
GeneID	`131008854`
locus_tag	`-`
NCBI Name	`LOC131008854`
原始查询	`SmilChr02G004856`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os09g0421600; species=rice; confidence=low
产物	hit=Os09g0421600; species=rice; confidence=low
Arabidopsis	`AT5G61190` (AT5G61190) putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836240] identity=24.8; qcov=0.482; evalue=2.37e-06; confidence=weak
Rice	`Os09g0421600` - identity=28.2; qcov=0.46; evalue=4.4e-11; confidence=low
GO	GO:0003725 (double-stranded RNA binding); GO:0003727 (single-stranded RNA binding); GO:0008270 (zinc ion binding); GO:0071011 (precatalytic spliceosome)
KEGG	-
Pfam	PF12874 (zf-met)
InterPro	-
eggNOG	-
NR	GeneID:131008854

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791931.1`
2	Chromosome	染色体	0.00000	`XP_057791931.1`
3	Centromere	着丝粒	0.00000	`XP_057791931.1`
4	Chromatin	染色质	0.00000	`XP_057791931.1`
5	Telomere	端粒	0.00000	`XP_057791931.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70707904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:70707928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:70708182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:70708266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr2:70708272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:70708473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B24,B33,B93,C2
`Chr2:70708573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B67,B91,C79,C85
`Chr2:70708580`	`A`	`AG`	1bp_insertion	frameshift_variant	6	B100,B21,B33,B4,C30,C33
`Chr2:70708600`	`GA`	`G`	1bp_deletion	frameshift_variant	7	A3,B119,B140,B2,B8,C36,C83
`Chr2:70708605`	`G`	`GC`	1bp_insertion	frameshift_variant	22	A11,A3,B10,B103,B109,B11,B114,B133,B139,B36,B69,B81,B84,C19,C30,C36,C55,C70,C77,D10,D11,D8
`Chr2:70708614`	`AG`	`A`	1bp_deletion	frameshift_variant	90	A16,A22,A5,B1,B101,B104,B107,B110,B112,B113,B118,B119,B122,B128,B131,B135,B16,B17,B22,B26,B3,B31,B32,B34,B37,B40,B41,B44,B47,B5,B56,B58,B61,B62,B63,B65,B66,B67,B68,B69,B7,B70,B73,B75,B79,B81,B82,B83,B88,B90,B91,B92,B93,B95,B96,B97,B99,C12,C14,C15,C17,C18,C20,C21,C26,C28,C29,C39,C42,C47,C50,C53,C54,C56,C57,C6,C60,C63,C64,C65,C66,C7,C73,C75,C76,C77,C82,C86,D1,D6
`Chr2:70708618`	`G`	`GAA`	2bp_insertion	frameshift_variant	7	A3,B119,B140,B2,B8,C36,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791931.1

348 aa

174

348

zf-met

PF12874 zf-met 219-241 aa PF12874 zf-met 268-291 aa PF12874 zf-met 313-336 aa

XP_057791932.1

309 aa

154

309

zf-met

PF12874 zf-met 180-202 aa PF12874 zf-met 229-252 aa PF12874 zf-met 274-297 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791931.1`	Pfam	`PF12874`	zf-met	Domain	219	241	6.8e-19	68.2	Zinc-finger of C2H2 type
`XP_057791931.1`	Pfam	`PF12874`	zf-met	Domain	268	291	6.8e-19	68.2	Zinc-finger of C2H2 type
`XP_057791931.1`	Pfam	`PF12874`	zf-met	Domain	313	336	6.8e-19	68.2	Zinc-finger of C2H2 type
`XP_057791932.1`	Pfam	`PF12874`	zf-met	Domain	180	202	4e-19	69.0	Zinc-finger of C2H2 type
`XP_057791932.1`	Pfam	`PF12874`	zf-met	Domain	229	252	4e-19	69.0	Zinc-finger of C2H2 type
`XP_057791932.1`	Pfam	`PF12874`	zf-met	Domain	274	297	4e-19	69.0	Zinc-finger of C2H2 type

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935949.1
AATTTTAAACAACAATATTTATTTCATGTAGTGTTAATTTTCCTTTTAAAAAATTTCACAGTTTATGGCGTAAACTCGATAGATGATTTGTTAAGAGAAGATAATTAATCTCATAGAGAAATATGGATGAATATGGTGAGCAAAAACCAGATCCCTCACTGTTAAAACTCCAGGTTGAATCGTTGGAACTCAATCGAACTTTAAGCTTCAAGGAGTGGATGAACAAACGTACAACCTCTCCAGCAAGCCCGGATGGCGTT...

XM_057935948.1
AATTTTAAACAACAATATTTATTTCATGTAGTGTTAATTTTCCTTTTAAAAAATTTCACAGTTTATGGCGTAAACTCGATAGATGATTTGTTAAGAGAAGATAATTAATCTCATAGAGAAATATGGATGAATATGGTGAGCAAAAACCAGATCCCTCACTGTTAAAACTCCAGGTTGAATCGTTGGAACTCAATCGAACTTTAAGCTTCAAGGAGTGGATGAACAAACGTACAACCTCTCCAGCAAGCCCGGATGGCGTT...

CDS

2 records

下载 CDS FASTA

LOC131008854
ATGGATGAATATGGTGAGCAAAAACCAGATCCCTCACTGTTAAAACTCCAGGTTGAATCGTTGGAACTCAATCGAACTTTAAGCTTCAAGGAGTGGATGAACAAACGTACAACCTCTCCAGCAAGCCCGGATGGCGTTTCCTCGAAGAAGGTACGATCATCTGTCGCGCCTCAAACTCAGACAGGAGGACTACTTATGATCAAGATCAAAGATGAGCCGTTGCAAGGCCCGCCTGGACTATCATACGACGAGCACCTAGC...

Protein

2 records

下载 Protein FASTA

XP_057791931.1
MDEYGEQKPDPSLLKLQVESLELNRTLSFKEWMNKRTTSPASPDGVSSKKVRSSVAPQTQTGGLLMIKIKDVSFLFSLFFPLQVSHHFLLLNPQIVVKAVTFFLPRFMQQEPLQGPPGLSYDEHLASAARDWIGTSKASSNKFQTHPPPNELPIPNLYTKPNQVEGLKLLPEAGIPTRPDSFLKRKARDSEQPEKLATPPLLPTNNDSKMGKPGNNLLCHLCNVSCSSALTLKQHLVGRPHKAKIKYMKMKRGTTSSNTW...

XP_057791932.1
MDEYGEQKPDPSLLKLQVESLELNRTLSFKEWMNKRTTSPASPDGVSSKKVRSSVAPQTQTGGLLMIKIKDEPLQGPPGLSYDEHLASAARDWIGTSKASSNKFQTHPPPNELPIPNLYTKPNQVEGLKLLPEAGIPTRPDSFLKRKARDSEQPEKLATPPLLPTNNDSKMGKPGNNLLCHLCNVSCSSALTLKQHLVGRPHKAKIKYMKMKRGTTSSNTWGRQGGEPRCDICEIWCPDVGSLQMHFKGQKHKAKVQESS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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