Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004877`

染色体: Chr02 坐标: 70842455-70852271 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004877`
名称	SmilChr02G004877
描述	uncharacterized SmilChr02G004877
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70842455 - 70852271 / `-`

ID 对照

NCBI Gene ID	`LOC131008875`
GeneID	`131008875`
locus_tag	`-`
NCBI Name	`LOC131008875`
原始查询	`SmilChr02G004877`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ubiquitin carboxyl-terminal hydrolase-related protein [Source:NCBI gene (formerly Entrezgene);Acc:823944]; symbol=AT3G47890; hit=AT3G47890; species=arabidopsis; confidence=high
产物	Ubiquitin carboxyl-terminal hydrolase-related protein [Source:NCBI gene (formerly Entrezgene);Acc:823944]; symbol=AT3G47890; hit=AT3G47890; species=arabidopsis; confidence=high
Arabidopsis	`AT3G47890` (AT3G47890) Ubiquitin carboxyl-terminal hydrolase-related protein [Source:NCBI gene (formerly Entrezgene);Acc:823944] identity=54.6; qcov=0.982; evalue=0; confidence=high
Rice	`Os03g0165600` - identity=61.4; qcov=0.243; evalue=2.48e-158; confidence=weak
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0005515 (protein binding); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF00443 (UCH); PF04780 (DUF629); PF04781 (DUF627)
InterPro	-
eggNOG	-
NR	GeneID:131008875

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057791954.1`
2	Cytosol	细胞质基质	0.40000	`XP_057791954.1`
3	Cytoplasm	细胞质	0.20000	`XP_057791954.1`
4	Chromosome	染色体	0.00000	`XP_057791954.1`
5	Centromere	着丝粒	0.00000	`XP_057791954.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70843255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B95,C14,C31,C48,C7
`Chr2:70844421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B134,C46,C79
`Chr2:70845003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:70845029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:70845486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B126,D5
`Chr2:70845691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B95,C14,C31,C48,C7
`Chr2:70845782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr2:70845811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:70847609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:70848175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C18,D6,D7
`Chr2:70848210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:70848393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B134,C46,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791954.1

1632 aa

816

1632

DUF627

DUF629

UCH

PF04781 DUF627 82-191 aa PF04780 DUF629 354-895 aa PF00443 UCH 1300-1628 aa

XP_057791955.1

1632 aa

816

1632

DUF627

DUF629

UCH

PF04781 DUF627 82-191 aa PF04780 DUF629 354-895 aa PF00443 UCH 1300-1628 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791954.1`	Pfam	`PF04781`	DUF627	Family	82	191	5e-35	120.4	Protein of unknown function (DUF627)
`XP_057791954.1`	Pfam	`PF04780`	DUF629	Family	354	895	1.2e-147	493.1	Protein of unknown function (DUF629)
`XP_057791954.1`	Pfam	`PF00443`	UCH	Family	1300	1628	1.8e-29	103.8	Ubiquitin carboxyl-terminal hydrolase
`XP_057791955.1`	Pfam	`PF04781`	DUF627	Family	82	191	5e-35	120.4	Protein of unknown function (DUF627)
`XP_057791955.1`	Pfam	`PF04780`	DUF629	Family	354	895	1.2e-147	493.1	Protein of unknown function (DUF629)
`XP_057791955.1`	Pfam	`PF00443`	UCH	Family	1300	1628	1.8e-29	103.8	Ubiquitin carboxyl-terminal hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057935972.1
TCTCATCTCTCTCCCCCGAGTCCCCTCGCCTCCCCCAAACACACTAAAAAACTACACTCCAAAATCTGCACATTTTCCAAACCCCCACCCCACCAACTGCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACCAACACTCAATTACTGATTTACACTATCCATTTATACACACACATATACGTATTATGTCTGTGTGTATACACGCCTCAACTCCGATCGTTCTACTTCGCGATTGCTGAGTAAGTCTCCCT...

XM_057935971.1
CCCTCGCCTCCCCCAAACACACTAAAAAACTACACTCCAAAATCTGCACATTTTCCAAACCCCCACCCCACCAACTGCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACCAACACTCAATTACTGATTTACACTATCCATTTATACACACACATATACGTATTATGTCTGTGTGTATACACGCCTCAACTCCGATCGTTCTACTTCGCGATTGCTGACCATCGGAAAATCTGAAATGGGGCATAAGAAGCG...

CDS

2 records

下载 CDS FASTA

LOC131008875
ATGGGGCATAAGAAGCGAAACGTCGCTCCTCGCTCCAAACCATCCCAACCGCCGTGTGCGGCGGTGGTCGCGGACGATGCCGTCGCTGCCAACGGTGGGGCTTCAATCCTAGAGAATTCCCCAAACCCTTCCGGGAAAAAAATTGCAAAATCGCACCCTGCGGATTCGGAGGGCAATGGCAATAGCAATAGCAATGCAAACCCTTGTTCGCCCTACGCTTCGATTAAGCTTGAATGCGAGCGCGCCCTCACAGCGCTGCG...

Protein

2 records

下载 Protein FASTA

XP_057791954.1
MGHKKRNVAPRSKPSQPPCAAVVADDAVAANGGASILENSPNPSGKKIAKSHPADSEGNGNSNSNANPCSPYASIKLECERALTALRRGNHTKALRLMKDLCSRHENSTHSALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIESARKAVDLCPNSIEFAHFYANLLYEAANEGKEYEDVVKECERALAIDNPVDPAKESLQAENQQKISTAEARVANVQSELKSLIQKSNIASISTWMKNLSNGDEKFRLIPIRKMPED...

XP_057791955.1
MGHKKRNVAPRSKPSQPPCAAVVADDAVAANGGASILENSPNPSGKKIAKSHPADSEGNGNSNSNANPCSPYASIKLECERALTALRRGNHTKALRLMKDLCSRHENSTHSALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIESARKAVDLCPNSIEFAHFYANLLYEAANEGKEYEDVVKECERALAIDNPVDPAKESLQAENQQKISTAEARVANVQSELKSLIQKSNIASISTWMKNLSNGDEKFRLIPIRKMPED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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