当前解析结果
SmilChr02G004895| 统一新 Gene ID | SmilChr02G004895 |
|---|---|
| 名称 | SmilChr02G004895 |
| 描述 | cytochrome P450 94A1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70971492 - 70973380 / + |
| NCBI Gene ID | LOC131008891 |
|---|---|
| GeneID | 131008891 |
| locus_tag | - |
| NCBI Name | LOC131008891 |
| 原始查询 | SmilChr02G004895 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 94A1-like |
| 产物 | cytochrome P450 94A1-like |
| Arabidopsis | AT5G63450 (CYP94B1)cytochrome P450, family 94, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:836464] identity=47.5; qcov=0.933; evalue=4.95e-152; confidence=high |
| Rice | Os03g0223100- identity=46.3; qcov=0.978; evalue=9.07e-154; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008891 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057791976.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057791976.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791976.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791976.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791976.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70971942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:70972068 |
AC |
A |
1bp_deletion | frameshift_variant | 8 | B106,B118,B125,B132,B34,C39,C81,D9 |
Chr2:70972132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:70972219 |
CGA |
C |
2bp_deletion | frameshift_variant | 7 | B106,B119,B56,B8,B87,B96,C29 |
Chr2:70972331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C54,C64,C66 |
Chr2:70972546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr2:70972821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:70972894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B92,C18,C39,C66 |
Chr2:70972903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B92,C18,C39,C66 |
Chr2:70973191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,B73,C17 |
Chr2:70973204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791976.1PF00067
p450 48-482 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791976.1 |
Pfam | PF00067 |
p450 | Domain | 48 | 482 | 7.7e-66 | 223.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。