当前解析结果
SmilChr02G004896| 统一新 Gene ID | SmilChr02G004896 |
|---|---|
| 名称 | SmilChr02G004896 |
| 描述 | cytochrome P450 94A2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 70977969 - 70979822 / + |
| NCBI Gene ID | LOC131008893 |
|---|---|
| GeneID | 131008893 |
| locus_tag | - |
| NCBI Name | LOC131008893 |
| 原始查询 | SmilChr02G004896 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 94A2-like |
| 产物 | cytochrome P450 94A2-like |
| Arabidopsis | AT5G63450 (CYP94B1)cytochrome P450, family 94, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:836464] identity=45; qcov=0.936; evalue=1.04e-157; confidence=high |
| Rice | Os03g0223100- identity=44.9; qcov=0.898; evalue=1.68e-149; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008893 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057791978.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057791978.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791978.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791978.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791978.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:70978027 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B57 |
Chr2:70978027 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B57 |
Chr2:70978108 |
CA |
C |
1bp_deletion | frameshift_variant | 66 | A1,A13,A14,A16,A21,A23,B100,B101,B105,B114,B117,B121,B122,B126,B13,B132,B134,B2,B20,B34,B4,B45,B47,B54,B57,B58,B59,B6,B62,B67,B70,B72,B76,B78,B83,B88,B89,B93,B94,C11,C13,C15,C18,C2,C27,C36,C39,C41,C46,C48,C52,C53,C54,C56,C57,C59,C61,C63,C65,C69,C80,C9,D10,D11,D2,D5 |
Chr2:70978156 |
CA |
C |
1bp_deletion | frameshift_variant | 108 | A10,A11,A19,A2,A20,A22,A23,A24,A3,A4,A5,A6,B101,B106,B111,B112,B113,B118,B119,B123,B125,B126,B128,B129,B131,B135,B136,B139,B15,B19,B2,B25,B28,B3,B30,B31,B33,B36,B37,B38,B39,B44,B45,B46,B48,B50,B51,B53,B55,B56,B58,B63,B65,B7,B70,B71,B72,B73,B76,B77,B8,B80,B83,B85,B86,B87,B88,B9,B90,B92,B94,B96,B97,C10,C13,C16,C19,C20,C21,C23,C24,C26,C29,C3,C31,C36,C4,C42,C44,C45,C5,C50,C54,C58,C59,C6,C60,C7,C73,C76,C77,C79,C8,C83,C84,D1,D10,D9 |
Chr2:70978566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C74 |
Chr2:70978575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:70978693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B74,C64,C66 |
Chr2:70978695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B98,C24,C51 |
Chr2:70978800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,C49,C81 |
Chr2:70978893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B29,C23,C82 |
Chr2:70978922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C80 |
Chr2:70979096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791978.1PF00067
p450 138-535 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791978.1 |
Pfam | PF00067 |
p450 | Domain | 138 | 535 | 5.5e-61 | 207.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。