Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004913`

染色体: Chr02 坐标: 71123696-71125947 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004913`
名称	SmilChr02G004913
描述	pentatricopeptide repeat-containing protein At1g74630
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71123696 - 71125947 / `-`

ID 对照

NCBI Gene ID	`LOC131008927`
GeneID	`131008927`
locus_tag	`-`
NCBI Name	`LOC131008927`
原始查询	`SmilChr02G004913`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g74630
产物	pentatricopeptide repeat-containing protein At1g74630
Arabidopsis	`AT1G74630` (AT1G74630) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843802] identity=57.8; qcov=0.988; evalue=0; confidence=high
Rice	`Os03g0241800` - identity=40; qcov=0.912; evalue=8.6e-139; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131008927

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792030.1`
2	Nucleus	细胞核	0.00000	`XP_057792030.1`
3	Chromosome	染色体	0.00000	`XP_057792030.1`
4	Centromere	着丝粒	0.00000	`XP_057792030.1`
5	Chromatin	染色质	0.00000	`XP_057792030.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71123935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr2:71123951`	`ACC`	`A`	2bp_deletion	frameshift_variant	92	A15,A19,A2,A20,A22,A24,A4,A6,A7,A8,A9,B100,B101,B102,B104,B106,B110,B113,B118,B120,B124,B131,B133,B135,B136,B14,B140,B19,B2,B20,B23,B24,B27,B31,B32,B33,B36,B37,B40,B42,B43,B44,B46,B52,B6,B65,B66,B68,B69,B71,B74,B77,B80,B81,B84,B9,B93,B94,B95,C12,C14,C19,C2,C25,C3,C30,C32,C33,C35,C36,C4,C40,C49,C5,C54,C58,C6,C60,C62,C64,C66,C67,C68,C72,C74,C75,C77,C87,C9,D10,D5,D7
`Chr2:71123956`	`C`	`CGT`	2bp_insertion	frameshift_variant	1	B35
`Chr2:71123956`	`C`	`CGT`	2bp_insertion	CDS_variant	1	B35
`Chr2:71123962`	`C`	`CCA`	2bp_insertion	frameshift_variant	74	A15,A19,A2,A20,A22,A24,A4,A6,A7,A9,B101,B102,B104,B106,B11,B110,B113,B118,B120,B124,B131,B133,B135,B136,B14,B140,B19,B2,B20,B23,B24,B27,B32,B33,B36,B37,B40,B65,B66,B68,B71,B74,B77,B81,B84,B9,B93,B94,C12,C2,C25,C3,C30,C32,C33,C36,C40,C49,C54,C58,C6,C60,C62,C64,C66,C67,C68,C72,C74,C77,C87,C9,D10,D4
`Chr2:71123981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr2:71124022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,C49
`Chr2:71124024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:71124038`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C63
`Chr2:71124038`	`T`	`TC`	1bp_insertion	CDS_variant	1	C63
`Chr2:71124052`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B19,B27,B46,B9,C54
`Chr2:71124052`	`CA`	`C`	1bp_deletion	CDS_variant	5	B19,B27,B46,B9,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792030.1

645 aa

322

645

PPR

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

DYW_deaminase

PF01535 PPR 72-99 aa PF01535 PPR 146-168 aa PF13812 PPR_3 171-202 aa PF01535 PPR 174-200 aa PF01535 PPR 206-231 aa PF01535 PPR 236-263 aa PF01535 PPR 309-334 aa PF13041 PPR_2 336-384 aa PF01535 PPR 338-368 aa PF13812 PPR_3 359-418 aa PF01535 PPR 375-399 aa PF01535 PPR 410-434 aa PF20431 E_motif 453-515 aa PF14432 DYW_deaminase 552-645 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	72	99	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	146	168	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF13812`	PPR_3	Repeat	171	202	1.3e-19	70.8	Pentatricopeptide repeat domain
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	174	200	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	206	231	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	236	263	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	309	334	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF13041`	PPR_2	Repeat	336	384	3.6e-49	165.4	PPR repeat family
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	338	368	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF13812`	PPR_3	Repeat	359	418	1.3e-19	70.8	Pentatricopeptide repeat domain
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	375	399	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF01535`	PPR	Repeat	410	434	4.1e-56	184.1	PPR repeat
`XP_057792030.1`	Pfam	`PF20431`	E_motif	Repeat	453	515	1.1e-15	58.3	E motif
`XP_057792030.1`	Pfam	`PF14432`	DYW_deaminase	Domain	552	645	4.4e-36	123.3	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936047.1
AAGAATATTTTTCACATGCAACTTAAGGAATAAAATATTTTAAATTTTCACAATAAAATAAATATCCTCAAATAACACTTTAATTTAGAAAACAAAAAGGAATTTAGCAAAACAAACCATCAAATTTGAAACCAATTTTTGAGGGTGCCCCAAAATGAACGCAGTGTTCCGAATATCAAACAGTTGAAACGGCAACGATTTGCATGTCATGCAATGAACAACAGCGCACACCAATTCTGCTTCTCGCTCTTGAGCAGCTG...

CDS

1 records

下载 CDS FASTA

LOC131008927
ATGAACAACAGCGCACACCAATTCTGCTTCTCGCTCTTGAGCAGCTGCAAAACCCTGAGATCCCTCCAACAATTACAAGCCCACGCCACCAAATCCGCCCTCGACGCCGACCCACTCATCGCCGGAAAGCTCCTCCTCCACTGCGCCGTCCACGTCTCCAACGCCCACGACTACGCCCAACGCCTCCTGCTCCACGCCCCAAATCCCGACGCCTTCATGTACAACGCCGTCATCCGCGGCTTCTCCGATTCGGACTCCCC...

Protein

1 records

下载 Protein FASTA

XP_057792030.1
MNNSAHQFCFSLLSSCKTLRSLQQLQAHATKSALDADPLIAGKLLLHCAVHVSNAHDYAQRLLLHAPNPDAFMYNAVIRGFSDSDSPHSSISTFSLMLKNLGSQIDSFTLAFSLKSAANIRCPRTGTQLHCQALLRGLDTHIFVGTTLISMYAECGRVESACNMFDEIPDPNIVTWNALLTAFFRRGDVGGAERVFASMPAKSPTSYNLMLGGYAKLGEFVLAGKVFDEMPVRDEVSWSMMILGLAQHGWFEEAFGYFRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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