Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004915

染色体: Chr02 坐标: 71127287-71131478 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004915
名称SmilChr02G004915
描述uncharacterized SmilChr02G004915
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向71127287 - 71131478 / +

ID 对照

NCBI Gene IDLOC131008972
GeneID131008972
locus_tag-
NCBI NameLOC131008972
原始查询SmilChr02G004915

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843803]; symbol=AT1G74640; hit=AT1G74640; species=arabidopsis; confidence=high
产物alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843803]; symbol=AT1G74640; hit=AT1G74640; species=arabidopsis; confidence=high
ArabidopsisAT1G74640 (AT1G74640)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843803]
identity=67.2; qcov=0.891; evalue=4.96e-168; confidence=high
RiceOs09g0413700 (P0643D11.24-1)
-
identity=64.7; qcov=0.875; evalue=2.28e-145; confidence=high
GOGO:0009507 (chloroplast)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131008972

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057792114.1
2 Chloroplast thylakoid 类囊体 1.00000 XP_057792114.1
3 Chloroplast stroma 叶绿体基质 0.80000 XP_057792114.1
4 Chloroplast membrane 叶绿体膜 0.40000 XP_057792114.1
5 Chloroplast thylakoid membrane 类囊体膜 0.20000 XP_057792114.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:71127636 C T EMS_canonical_SNV CDS_variant 4 B113,B68,C62,D10
Chr2:71127848 A ATG 2bp_insertion stop_gained,frameshift_variant 1 B104
Chr2:71127848 A ATG 2bp_insertion CDS_variant 1 B104
Chr2:71127854 TG T 1bp_deletion frameshift_variant 12 B1,B10,B108,B34,B64,B8,C1,C23,C42,C5,C78,D3
Chr2:71127867 G A EMS_canonical_SNV CDS_variant 5 A4,B23,B28,C49,C81
Chr2:71130424 G A EMS_canonical_SNV CDS_variant 1 D6
Chr2:71130476 C T EMS_canonical_SNV CDS_variant 1 B132
Chr2:71130784 G A EMS_canonical_SNV CDS_variant 2 C35,C4
Chr2:71130855 C T EMS_canonical_SNV CDS_variant 1 C81
Chr2:71130910 C T EMS_canonical_SNV CDS_variant 2 A5,B44
Chr2:71131035 G A EMS_canonical_SNV CDS_variant 2 B107,B41
Chr2:71131040 G A EMS_canonical_SNV CDS_variant 1 B127

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936131.1
GGTAATAATCGAGAAAAAATTCCCACCTAACCACCACAAAATTTCAACTAAAAAAACAACTAAATTCAAAGACATAACTTAAACCCCAAAATATCTCAGTGAACGCAGCTGAATTCCGAGCACCATCAATGGCGTCCACTGCATTTCTTCGTCTTCCATCAACATCTCTTTCCCTACCACTAAAATCCTCCCGACCAATCTCGCCTTGCGCTTCCAAAACCCTAATCTTCAAAGTCAAGGCATCGACATCCGTCGACTTC...

CDS

1 records

下载 CDS FASTA
LOC131008972
ATGGCGTCCACTGCATTTCTTCGTCTTCCATCAACATCTCTTTCCCTACCACTAAAATCCTCCCGACCAATCTCGCCTTGCGCTTCCAAAACCCTAATCTTCAAAGTCAAGGCATCGACATCCGTCGACTTCTCCGCCCCGTCCAAGCCATCCCCAATTTCAACGACCAATTCCGGAAGCTGGAGGTGGAAATTCGACGGAAATTCCGTAAACATCCACTTCGACCGCCTCGAGAAAGGCGGCGCCGACGCCGATCAGCC...

Protein

1 records

下载 Protein FASTA
XP_057792114.1
MASTAFLRLPSTSLSLPLKSSRPISPCASKTLIFKVKASTSVDFSAPSKPSPISTTNSGSWRWKFDGNSVNIHFDRLEKGGADADQPRKDILLVPTISDVSTVDEWREVAEEIVAKDGGINWSATIVDWPGLGYSDRPKLNYNADVMEKFLVDFVTAPDSPISSSVADNEYVVFGGGHAATVAVRATKKGFLKPKAIAAVAPTWAGPLPIVFGKDSNMETRYGLLRGTLRAPAVGWMMYNVLVSNEKAITSQYKSHVYAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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