当前解析结果
SmilChr02G004915| 统一新 Gene ID | SmilChr02G004915 |
|---|---|
| 名称 | SmilChr02G004915 |
| 描述 | uncharacterized SmilChr02G004915 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71127287 - 71131478 / + |
| NCBI Gene ID | LOC131008972 |
|---|---|
| GeneID | 131008972 |
| locus_tag | - |
| NCBI Name | LOC131008972 |
| 原始查询 | SmilChr02G004915 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843803]; symbol=AT1G74640; hit=AT1G74640; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843803]; symbol=AT1G74640; hit=AT1G74640; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G74640 (AT1G74640)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843803] identity=67.2; qcov=0.891; evalue=4.96e-168; confidence=high |
| Rice | Os09g0413700 (P0643D11.24-1)- identity=64.7; qcov=0.875; evalue=2.28e-145; confidence=high |
| GO | GO:0009507 (chloroplast) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008972 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057792114.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057792114.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057792114.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057792114.1 |
| 5 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057792114.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71127636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,B68,C62,D10 |
Chr2:71127848 |
A |
ATG |
2bp_insertion | stop_gained,frameshift_variant | 1 | B104 |
Chr2:71127848 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B104 |
Chr2:71127854 |
TG |
T |
1bp_deletion | frameshift_variant | 12 | B1,B10,B108,B34,B64,B8,C1,C23,C42,C5,C78,D3 |
Chr2:71127867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B23,B28,C49,C81 |
Chr2:71130424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:71130476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr2:71130784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C35,C4 |
Chr2:71130855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:71130910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B44 |
Chr2:71131035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B41 |
Chr2:71131040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。