Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004920`

染色体: Chr02 坐标: 71235412-71237777 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004920`
名称	SmilChr02G004920
描述	protein EMBRYO DEFECTIVE 514
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71235412 - 71237777 / `+`

ID 对照

NCBI Gene ID	`LOC131009016`
GeneID	`131009016`
locus_tag	`-`
NCBI Name	`LOC131009016`
原始查询	`SmilChr02G004920`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein EMBRYO DEFECTIVE 514
产物	protein EMBRYO DEFECTIVE 514
Arabidopsis	`AT5G62440` (AT5G62440) EMB514 (DUF3223) [Source:NCBI gene (formerly Entrezgene);Acc:836365] identity=63.4; qcov=0.438; evalue=1.81e-50; confidence=low
Rice	`Os03g0187000` - identity=65.4; qcov=0.418; evalue=2.99e-49; confidence=low
GO	GO:0009507 (chloroplast); GO:0009658 (chloroplast organization); GO:1901259 (chloroplast rRNA processing)
KEGG	-
Pfam	PF11523 (DUF3223)
InterPro	-
eggNOG	-
NR	GeneID:131009016

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792183.1`
2	Nucleoplasm	核质	1.00000	`XP_057792183.1`
3	Nuclear body	核内小体	0.60000	`XP_057792184.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057792183.1`
5	Nucleolus	核仁	0.20000	`XP_057792183.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71235578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B41,C81,C82
`Chr2:71235595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:71235785`	`GAA`	`G`	2bp_deletion	frameshift_variant	46	A1,A14,A2,A23,A4,A5,A7,A8,B1,B100,B111,B120,B131,B137,B18,B2,B21,B27,B38,B51,B53,B55,B56,B6,B64,B80,B85,B88,B91,B94,C11,C20,C3,C34,C38,C45,C52,C54,C55,C63,C64,C66,C76,C85,C9,D10
`Chr2:71235800`	`AT`	`A`	1bp_deletion	frameshift_variant	64	A1,A14,A19,A2,A20,A21,A23,A4,A7,A8,B1,B100,B11,B111,B120,B126,B131,B137,B15,B18,B2,B21,B27,B28,B29,B38,B50,B51,B55,B56,B6,B78,B80,B85,B88,B91,B94,C10,C11,C14,C20,C22,C24,C3,C34,C37,C38,C43,C45,C52,C54,C55,C61,C63,C64,C66,C76,C81,C83,C84,C85,C9,D10,D4
`Chr2:71235803`	`C`	`CA`	1bp_insertion	frameshift_variant	62	A1,A14,A19,A2,A20,A23,A4,A7,A8,B1,B100,B11,B111,B120,B131,B137,B15,B18,B2,B21,B27,B28,B29,B38,B50,B51,B55,B56,B6,B78,B80,B85,B88,B91,B94,C10,C11,C14,C20,C22,C24,C3,C34,C37,C38,C43,C45,C52,C54,C55,C61,C63,C64,C66,C76,C81,C83,C84,C85,C9,D10,D4
`Chr2:71235831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr2:71235836`	`AT`	`A`	1bp_deletion	frameshift_variant	7	B104,B25,B44,B53,B64,C17,C47
`Chr2:71235927`	`G`	`GT`	1bp_insertion	frameshift_variant	11	A15,B113,B117,B124,B71,B92,C16,C62,C67,C82,D6
`Chr2:71235942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B11,C29,C30
`Chr2:71235957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B139,C36,D7
`Chr2:71237381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr2:71237396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792183.1

271 aa

136

271

DUF3223

PF11523 DUF3223 161-233 aa

XP_057792184.1

256 aa

128

256

DUF3223

PF11523 DUF3223 146-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792183.1`	Pfam	`PF11523`	DUF3223	Family	161	233	7e-28	97.7	Protein of unknown function (DUF3223)
`XP_057792184.1`	Pfam	`PF11523`	DUF3223	Family	146	218	6.6e-28	97.8	Protein of unknown function (DUF3223)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936200.1
AAAATCAAGACTATAAATTAGGAATATGGATGAATAGAAGAGAGAAGCTTGAAGCGGTTTGAAAATAAAAAATAGTAGTAAAAAATTCAAAAAACCTAAAACCGCTAGGGTTTACACTCCGAACGGCTCCCTACCTCATTCATGGCGGACGACGCAGCTCCAGAGGCTCCGATGGAGGTCGAGCTTACAGCGGAAGTCTCGGATGTGAAGATTCTGGCGGAGGATTCCGAGAACGCCTCGGATGTGAAGATTCTGGCGGA...

XM_057936201.1
AATAGAAGAGAGAAGCTTGAAGCGGTTTGAAAATAAAAAATAGTAGTAAAAAATTCAAAAAACCTAAAACCGCTAGGGTTTACACTCCGAACGGCTCCCTACCTCATTCATGGCGGACGACGCAGCTCCAGAGGCTCCGATGGAGGTCGAGCTTACAGCGGAAGTCTCGGATGTGAAGATTCTGGCGGAGGATTCCGAGAACGCCTCGGATGTGAAGATTCTGGCGGAGGATTCCGAGAACGGAGGCGCGAAGCGCTCCA...

CDS

2 records

下载 CDS FASTA

LOC131009016
ATGGCGGACGACGCAGCTCCAGAGGCTCCGATGGAGGTCGAGCTTACAGCGGAAGTCTCGGATGTGAAGATTCTGGCGGAGGATTCCGAGAACGCCTCGGATGTGAAGATTCTGGCGGAGGATTCCGAGAACGGAGGCGCGAAGCGCTCCAGGGAGGAAGATGAGTCGGCGGAGCAAAAGGAGAAGAGAACGAAAACCGAGGATGCGAAGTCCGGGGAGCAAAAGGAGAAGAGAACGAAAACCGAGGATGCGAAGTCCGG...

Protein

2 records

下载 Protein FASTA

XP_057792183.1
MADDAAPEAPMEVELTAEVSDVKILAEDSENASDVKILAEDSENGGAKRSREEDESAEQKEKRTKTEDAKSGEQKEKRTKTEDAKSGEEEKSAGDGEGKTEEQKDDGETMAEEKIAGDGEEKTEEQKDGGETMAEEKESDKAVVGPKTFDTSVEMYDYFFKLLHSWTPNLNLNKYEHLVLLELLKKGHLEAERKIGAGVKAFQVRFHPQFKSRCFFILREDESVDDFSFRKCVDHISPLPENMQVKHDVNKALRGKGGGR...

XP_057792184.1
MADDAAPEAPMEVELTAEVSDVKILAEDSENASDVKILAEDSENGGAKRSREEDESAEQKEKRTKTEDAKSGEEEKSAGDGEGKTEEQKDDGETMAEEKIAGDGEEKTEEQKDGGETMAEEKESDKAVVGPKTFDTSVEMYDYFFKLLHSWTPNLNLNKYEHLVLLELLKKGHLEAERKIGAGVKAFQVRFHPQFKSRCFFILREDESVDDFSFRKCVDHISPLPENMQVKHDVNKALRGKGGGRGRGRGRGRGWK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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