当前解析结果
SmilChr02G004941| 统一新 Gene ID | SmilChr02G004941 |
|---|---|
| 名称 | SmilChr02G004941 |
| 描述 | uncharacterized SmilChr02G004941 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71365587 - 72349615 / - |
| NCBI Gene ID | LOC131008955 |
|---|---|
| GeneID | 131008955 |
| locus_tag | - |
| NCBI Name | LOC131008955 |
| 原始查询 | SmilChr02G004941 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:832835]; symbol=AT5G27730; hit=AT5G27730; species=arabidopsis; confidence=high |
| 产物 | heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:832835]; symbol=AT5G27730; hit=AT5G27730; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G27730 (AT5G27730)heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:832835] identity=66.5; qcov=0.938; evalue=1.61e-163; confidence=high |
| Rice | Os01g0931100- identity=66.4; qcov=0.918; evalue=4.45e-153; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF07786 (HGSNAT_cat) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008955 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057792084.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057792084.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057792086.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057792084.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057792084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72346279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B134,C57 |
Chr2:72346972 |
AAC |
A |
2bp_deletion | frameshift_variant | 4 | B136,B9,C35,C86 |
Chr2:72346972 |
AAC |
A |
2bp_deletion | CDS_variant | 4 | B136,B9,C35,C86 |
Chr2:72347324 |
C |
CT |
1bp_insertion | frameshift_variant | 99 | A1,A11,A14,A15,A16,A19,A23,A7,A8,B1,B103,B104,B105,B107,B108,B112,B117,B118,B121,B122,B123,B128,B129,B132,B136,B137,B14,B15,B2,B23,B26,B3,B32,B35,B40,B42,B43,B44,B45,B48,B49,B50,B54,B55,B57,B59,B6,B64,B68,B7,B71,B74,B79,B80,B84,B87,B89,B97,C1,C10,C12,C13,C14,C15,C16,C19,C20,C22,C23,C26,C27,C3,C31,C32,C36,C37,C4,C41,C42,C48,C49,C53,C54,C56,C60,C61,C63,C64,C66,C68,C71,C72,C79,C83,C85,C87,C9,D2,D5 |
Chr2:72347383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:72347390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:72347421 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C75 |
Chr2:72347421 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C75 |
Chr2:72347701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr2:72347705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:72347709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr2:72347848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B126,B131,B24,B33,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792084.1PF07786
HGSNAT_cat 32-163 aa
XP_057792085.1PF07786
HGSNAT_cat 32-163 aa
XP_057792086.1PF07786
HGSNAT_cat 32-164 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792084.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 32 | 163 | 1.9e-05 | 25.0 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057792085.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 32 | 163 | 1.9e-05 | 25.0 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
XP_057792086.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 32 | 164 | 1.7e-05 | 25.2 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。