Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004942`

染色体: Chr02 坐标: 71366841-71374911 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004942`
名称	SmilChr02G004942
描述	MADS-box protein SOC1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71366841 - 71374911 / `+`

ID 对照

NCBI Gene ID	`LOC131009030`
GeneID	`131009030`
locus_tag	`-`
NCBI Name	`LOC131009030`
原始查询	`SmilChr02G004942`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MADS-box protein SOC1
产物	MADS-box protein SOC1
Arabidopsis	`AT2G45660` (AGL20) AGAMOUS-like 20 [Source:NCBI gene (formerly Entrezgene);Acc:819174] identity=65.4; qcov=1.03; evalue=1.09e-89; confidence=high
Rice	`Os03g0122600` (OsMADS50) - identity=53.7; qcov=1.04; evalue=1.01e-68; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131009030

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792207.1`
2	Chromosome	染色体	0.00000	`XP_057792207.1`
3	Centromere	着丝粒	0.00000	`XP_057792207.1`
4	Chromatin	染色质	0.00000	`XP_057792207.1`
5	Telomere	端粒	0.00000	`XP_057792207.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71374315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B59,B61,B95,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792207.1

221 aa

110

221

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-171 aa

XP_057792208.1

221 aa

110

221

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-171 aa

XP_057792209.1

221 aa

110

221

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-171 aa

XP_057792210.1

221 aa

110

221

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-171 aa

XP_057792211.1

207 aa

104

207

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 84-156 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792207.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.9e-27	94.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057792207.1`	Pfam	`PF01486`	K-box	Family	84	171	1.6e-27	96.2	K-box region
`XP_057792208.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.9e-27	94.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057792208.1`	Pfam	`PF01486`	K-box	Family	84	171	1.6e-27	96.2	K-box region
`XP_057792209.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.9e-27	94.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057792209.1`	Pfam	`PF01486`	K-box	Family	84	171	1.6e-27	96.2	K-box region
`XP_057792210.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.9e-27	94.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057792210.1`	Pfam	`PF01486`	K-box	Family	84	171	1.6e-27	96.2	K-box region
`XP_057792211.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.5e-27	94.8	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057792211.1`	Pfam	`PF01486`	K-box	Family	84	156	1.5e-22	80.2	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057936224.1
TGCTTTAAGGTGTGGGGTAGGCCTAAACTAGCAAAGGATGAGGTTTTTGGTGATAAAAATGAATTGGAGCGTGTTTATGATGAGTTTGTTCAAGTTTCCTTTTCTTGTTTGGTTTTGAAGAGGAAAAAGGAAGGGACTATACATAAGCAAGGAAGCTAGTATTTTTCCCCACTGTGTGAGGTGTCTCAACCTATTTTTTGCTATTTTAATTGCCCATTTTGATTGATATAATTCCCATTCCCATAAAAGGGGACTGTGAA...

XM_057936227.1
TGCTTTAAGGTGTGGGGTAGGCCTAAACTAGCAAAGGATGAGGTTTTTGGTGATAAAAATGAATTGGAGCGTGTTTATGATGAGTTTGTTCAAGTTTCCTTTTCTTGTTTGGTTTTGAAGAGGAAAAAGGAAGGGACTATACATAAGCAAGGAAGCTAGTATTTTTCCCCACTGTGTGAGAAAAAAAGCAAAAAAAAAAAAAAAAGAAGCAAAAATGGTGAGAGGAAAGACTCAGATGAGGCGTATCGAGAACGCCACAA...

CDS

5 records

下载 CDS FASTA

LOC131009030
ATGGTGAGAGGAAAGACTCAGATGAGGCGTATCGAGAACGCCACAAGCAGGCAAGTGACCTTCTCGAAGAGGAGAAATGGGCTGCTGAAGAAGGCCTTCGAGCTCTCAGTTCTTTGCGATGCTGAGGTGGCACTCATCATCTTCTCCCCTAGAGGCAAGCTCCATGAATTCGCAAGCTCAAGCATGCATGAGACGATCGAGCGTTACCAGAAGCATACTAAAGATAATCAAGCTAACAATCCACCTTCGGAGCATAATAT...

Protein

5 records

下载 Protein FASTA

XP_057792207.1
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLHEFASSSMHETIERYQKHTKDNQANNPPSEHNMQHLKHEAASMMKKIEQLETSKRKLLGEGLGSCTIEELQHLEQQLERSVTTIRARKMQVYKQQIEHLKEKEKALAAENAMLCEKFGLQTRGGGGEGGSNEERAVAPSADISEVSDVETELFIGLPETRHKRPYQK

XP_057792208.1
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLHEFASSSMHETIERYQKHTKDNQANNPPSEHNMQHLKHEAASMMKKIEQLETSKRKLLGEGLGSCTIEELQHLEQQLERSVTTIRARKMQVYKQQIEHLKEKEKALAAENAMLCEKFGLQTRGGGGEGGSNEERAVAPSADISEVSDVETELFIGLPETRHKRPYQK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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