当前解析结果
SmilChr02G004947| 统一新 Gene ID | SmilChr02G004947 |
|---|---|
| 名称 | SmilChr02G004947 |
| 描述 | receptor-like serine/threonine-protein kinase At2g45590 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71411893 - 71414255 / - |
| NCBI Gene ID | LOC131008926 |
|---|---|
| GeneID | 131008926 |
| locus_tag | - |
| NCBI Name | LOC131008926 |
| 原始查询 | SmilChr02G004947 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like serine/threonine-protein kinase At2g45590 |
| 产物 | receptor-like serine/threonine-protein kinase At2g45590 |
| Arabidopsis | AT2G45590 (AT2G45590)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819167] identity=50.7; qcov=1.11; evalue=0; confidence=high |
| Rice | Os03g0251700- identity=47; qcov=0.994; evalue=1.38e-172; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008926 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792029.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792029.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792029.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792029.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792029.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71412185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,B61,D10 |
Chr2:71412333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:71412401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B7,B70,B98 |
Chr2:71412563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:71412584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,B98 |
Chr2:71412920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:71412937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr2:71412989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B60,B79 |
Chr2:71413133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:71413533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:71413547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B48,B89,C87,D11 |
Chr2:71413548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792029.1PF07714
PK_Tyr_Ser-Thr 71-243 aa
PF00069
Pkinase 71-247 aa
PF00069
Pkinase 508-621 aa
PF07714
PK_Tyr_Ser-Thr 511-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792029.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 71 | 243 | 7.5e-30 | 104.8 | Protein tyrosine and serine/threonine kinase |
XP_057792029.1 |
Pfam | PF00069 |
Pkinase | Domain | 71 | 247 | 2.5e-38 | 132.7 | Protein kinase domain |
XP_057792029.1 |
Pfam | PF00069 |
Pkinase | Domain | 508 | 621 | 2.5e-38 | 132.7 | Protein kinase domain |
XP_057792029.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 511 | 623 | 7.5e-30 | 104.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。