Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004950`

染色体: Chr02 坐标: 71444455-71450469 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004950`
名称	SmilChr02G004950
描述	WAT1-related protein At3g30340-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71444455 - 71450469 / `+`

ID 对照

NCBI Gene ID	`LOC131008995`
GeneID	`131008995`
locus_tag	`-`
NCBI Name	`LOC131008995`
原始查询	`SmilChr02G004950`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At3g30340-like
产物	WAT1-related protein At3g30340-like
Arabidopsis	`AT3G30340` (UMAMIT32) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:822735] identity=45; qcov=1.04; evalue=1.19e-113; confidence=high
Rice	`Os02g0103600` - identity=41.8; qcov=1.01; evalue=3.73e-94; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:131008995

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057792140.1`
2	Vacuole	液泡	0.20000	`XP_057792140.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057792140.1`
4	Nucleus	细胞核	0.00000	`XP_057792140.1`
5	Chromosome	染色体	0.00000	`XP_057792140.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71448218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B69,C16,C32,C68,C83
`Chr2:71448237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71448289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B7,B70,B98,D11,D4
`Chr2:71448613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:71448636`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B49
`Chr2:71448636`	`AT`	`A`	1bp_deletion	CDS_variant	1	B49
`Chr2:71448673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B73,C54
`Chr2:71449371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,D11
`Chr2:71449503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C31,C4,C7
`Chr2:71449696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B57,D10,D11
`Chr2:71449826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr2:71449884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C5,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792140.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792141.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792142.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792144.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792145.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792146.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792147.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792148.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792149.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

XP_057792150.1

339 aa

N

1

170

339

EamA

EamA

C

PF00892 EamA 3-145 aa PF00892 EamA 174-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792140.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792140.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792141.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792141.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792142.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792142.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792144.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792144.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792145.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792145.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792146.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792146.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792147.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792147.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792148.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792148.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792149.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792149.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family
`XP_057792150.1`	Pfam	`PF00892`	EamA	Domain	3	145	6.9e-27	95.1	EamA-like transporter family
`XP_057792150.1`	Pfam	`PF00892`	EamA	Domain	174	311	6.9e-27	95.1	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057936165.1
CAAATATTGGTCATGCTTAAAACACAATCGGCTCGAACACTTCCCATTTTGGTATTTCGCTTCAACCTTGATCAGCAGCAAAATCCTTATTTCGTGTGGAGCTCAAACGGTTATCTCTTTATCTCTGTGTGGCGCGACTAGGACGTAACTTTTGTGTTGAATTATTGAAGTTAGCTATCAAAGTTCAAGTTTCAGGTGTTATTGTTGTTGGAGACGCGTGGAGGGTAGAATTGGCGAGTGAAGTCATTTTACAGAGTTGC...

XM_057936159.1
CAAATATTGGTCATGCTTAAAACACAATCGGCTCGAACACTTCCCATTTTGGTATTTCGCTTCAACCTTGATCAGCAGCAAAATCCTTATTTCGTGTGGAGCTCAAACGGTTATCTCTTTATCTCTGTTATTGTTGTTGGAGACGCGTGGAGGGTAGAATTGGCGAGTGAAGTCATTTTACAGAGTAGTAGTCATTTTTATTAACGTTGCAGCAGGTGGATTGAGAGTGGAGCGAAGCGGGTAAAATGTGGAAGGCGGTG...

CDS

10 records

下载 CDS FASTA

LOC131008995
ATGTGGAAGGCGGTGTGTGCAATGGTGAGCGTGGAGCTCAGCTTAGCTCTCGTAAACATACTGCTGAAGAAGGCCATGAACGGCGGGATGAGCCGCGTCATCATCGTCGTGTACAGGCAATCCGTCGCCACCATCTTCTTAATCCCTTTCGCCTTCTTCTGGGAAAGGAATAGCTGGAGCAAGCTCACTGCCAGTTTGATCTGTCAAATGTTTCTATGCGCCTTGATCGGGTTGACACTCACGCAGTATTTGTTCTTGGT...

LOC131008995
ATGTGGAAGGCGGTGTGTGCAATGGTGAGCGTGGAGCTCAGCTTAGCTCTCGTAAACATACTGCTGAAGAAGGCCATGAACGGCGGGATGAGCCGCGTCATCATCGTCGTGTACAGGCAATCCGTCGCCACCATCTTCTTAATCCCTTTCGCCTTCTTCTGGGAAAGGAATAGCTGGAGCAAGCTCACTGCCAGTTTGATCTGTCAAATGTTTCTATGCGCCTTGATCGGGTTGACACTCACGCAGTATTTGTTCTTGGT...

Protein

10 records

下载 Protein FASTA

XP_057792140.1
MWKAVCAMVSVELSLALVNILLKKAMNGGMSRVIIVVYRQSVATIFLIPFAFFWERNSWSKLTASLICQMFLCALIGLTLTQYLFLVGLDYTSATFTCAFINIVPVITFLLAWPLRMERVDISRNSGKAKVAGTAVCVMGALLLSVYKGELLINHPRHGVEHRANVEAKRLGPGAAFLAAGSVAWSSWFLMQSKIGRYFPHRYSSTLIMSSFSSFQSALLCFVTDRDFSKWIVRGELDILTVVFSGIVGSGLCYVVMSWC...

XP_057792141.1
MWKAVCAMVSVELSLALVNILLKKAMNGGMSRVIIVVYRQSVATIFLIPFAFFWERNSWSKLTASLICQMFLCALIGLTLTQYLFLVGLDYTSATFTCAFINIVPVITFLLAWPLRMERVDISRNSGKAKVAGTAVCVMGALLLSVYKGELLINHPRHGVEHRANVEAKRLGPGAAFLAAGSVAWSSWFLMQSKIGRYFPHRYSSTLIMSSFSSFQSALLCFVTDRDFSKWIVRGELDILTVVFSGIVGSGLCYVVMSWC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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