当前解析结果
SmilChr02G004951| 统一新 Gene ID | SmilChr02G004951 |
|---|---|
| 名称 | SmilChr02G004951 |
| 描述 | (3S,6E)-nerolidol synthase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71469800 - 71473160 / + |
| NCBI Gene ID | LOC131008947 |
|---|---|
| GeneID | 131008947 |
| locus_tag | - |
| NCBI Name | LOC131008947 |
| 原始查询 | SmilChr02G004951 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | (3S,6E)-nerolidol synthase 1-like |
| 产物 | (3S%2C6E)-nerolidol synthase 1-like |
| Arabidopsis | AT1G61680 (TPS14)terpene synthase 14 [Source:NCBI gene (formerly Entrezgene);Acc:842465] identity=39.8; qcov=0.961; evalue=3.72e-116; confidence=medium |
| Rice | Os02g0121700 (OsTPS3)- identity=37.2; qcov=0.977; evalue=5.88e-108; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057792073.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057792073.1 |
| 3 | Chloroplast | 叶绿体 | 0.60000 | XP_057792073.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792073.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792073.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71470005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:71470119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C21 |
Chr2:71470172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,A9,B9,C56,D1 |
Chr2:71470194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:71470377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B29,B40,C61,C82 |
Chr2:71470430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C23 |
Chr2:71470525 |
ATG |
A |
2bp_deletion | frameshift_variant | 48 | A21,A23,A25,A4,A6,B104,B114,B120,B126,B128,B129,B18,B19,B2,B21,B22,B32,B5,B51,B60,B64,B7,B70,B74,B75,B77,B86,B87,B90,B92,B99,C15,C18,C21,C22,C28,C3,C4,C44,C49,C5,C64,C66,C72,C73,C87,D5,D8 |
Chr2:71470541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr2:71470645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B2,B25,B68 |
Chr2:71471541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,C16,C32 |
Chr2:71471555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,B41 |
Chr2:71471591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,C45,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792073.1PF01397
Terpene_synth 18-158 aa
PF03936
Terpene_synth_C 229-464 aa
PF19086
Terpene_syn_C_2 270-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792073.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 18 | 158 | 1.9e-32 | 113.2 | Terpene synthase, N-terminal domain |
XP_057792073.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 229 | 464 | 2e-66 | 224.5 | Terpene synthase family, metal binding domain |
XP_057792073.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 270 | 464 | 7.1e-40 | 137.6 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。