Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004962`

染色体: Chr02 坐标: 71542073-71546470 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004962`
名称	SmilChr02G004962
描述	stromal 70 kDa heat shock-related protein, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71542073 - 71546470 / `-`

ID 对照

NCBI Gene ID	`LOC131008923`
GeneID	`131008923`
locus_tag	`-`
NCBI Name	`LOC131008923`
原始查询	`SmilChr02G004962`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	stromal 70 kDa heat shock-related protein, chloroplastic
产物	stromal 70 kDa heat shock-related protein%2C chloroplastic
Arabidopsis	`AT5G49910` (cpHsc70-2) chloroplast heat shock protein 70-2 [Source:NCBI gene (formerly Entrezgene);Acc:835054] identity=82.2; qcov=1.02; evalue=0; confidence=high
Rice	`Os12g0244100` (OsHsp70CP2) - identity=84.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009507 (chloroplast); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:131008923

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057792026.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057792026.1`
3	Chloroplast thylakoid	类囊体	0.40000	`XP_057792026.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057792026.1`
5	Nucleus	细胞核	0.00000	`XP_057792026.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71542467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C16,C32,C51,C68,D4
`Chr2:71542476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:71542528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,B93
`Chr2:71542538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B93
`Chr2:71542638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:71542695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr2:71542710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B113,B17,B93
`Chr2:71542737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:71543362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr2:71543363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr2:71543452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,D10
`Chr2:71543593`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B133,B25,B53,B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792026.1

706 aa

353

706

HSP70

MreB_Mbl

PF00012 HSP70 68-662 aa PF06723 MreB_Mbl 177-435 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792026.1`	Pfam	`PF00012`	HSP70	Family	68	662	6.2e-266	884.1	Hsp70 protein
`XP_057792026.1`	Pfam	`PF06723`	MreB_Mbl	Family	177	435	3.7e-20	72.7	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936043.1
ATATTACCAACAACATCCAATCTTCCCCAAGTTCACAAAACCACTGAAACCAAGCACAGACGACAGATGATTCTAGAATTGTACACGTGTCGTCATCCTTCCCCCATAAACCCCGACTTCCTCCTCCTCCTCTTCTCTTATCTATCTCCTTCACCAAAATTTTCAGTCTCACCTCTACCGACGTCAGCTCCTCCCCAATTCTATTCCTAACTAGGGATTGCTGAATTGAATTTTCTTTTCTCACCAACTTCGCAGAATGG...

CDS

1 records

下载 CDS FASTA

LOC131008923
ATGGCGTCCTCCACTGCTCAAATCAATGCTCTCGGCGCCGTCGCTCACTTCACCGCCGTCAAATCCTCCACAAACCATCCCAATAGAACTGTGTTTTTCGGCTCCAAGGTCAACGGCAGCTCCGTCCCCTTCGGATTGAAGCTGAGGAGTAAGCATCGAAGCGGCCGACGCGGCTCTACTTTTCGTGTGGTGGCGGAGAAGGTTGTCGGGATTGACCTCGGCACCACCAATTCCGCCGTCGCGGCAATGGAGGGAGGAAA...

Protein

1 records

下载 Protein FASTA

XP_057792026.1
MASSTAQINALGAVAHFTAVKSSTNHPNRTVFFGSKVNGSSVPFGLKLRSKHRSGRRGSTFRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYNVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKSNETILVFDLGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器