当前解析结果
SmilChr02G004976| 统一新 Gene ID | SmilChr02G004976 |
|---|---|
| 名称 | SmilChr02G004976 |
| 描述 | FACT complex subunit SPT16-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71650157 - 71655342 / + |
| NCBI Gene ID | LOC131008908 |
|---|---|
| GeneID | 131008908 |
| locus_tag | - |
| NCBI Name | LOC131008908 |
| 原始查询 | SmilChr02G004976 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FACT complex subunit SPT16-like |
| 产物 | FACT complex subunit SPT16-like |
| Arabidopsis | AT4G10710 (SPT16)global transcription factor C [Source:NCBI gene (formerly Entrezgene);Acc:826665] identity=69.2; qcov=0.996; evalue=0; confidence=high |
| Rice | Os04g0321600 (Osspt16)- identity=68.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0006368 (transcription elongation by RNA polymerase II); GO:0031491 (nucleosome binding); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II); GO:0035101 (FACT complex) |
| KEGG | - |
| Pfam | PF00557 (Peptidase_M24); PF08512 (Rttp106-like_middle); PF08644 (SPT16); PF14826 (FACT-Spt16_Nlob); PF21091 (SPT16_C); PF24824 (PH_SPT16) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008908 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792000.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057792000.1 |
| 3 | Chromosome | 染色体 | 0.80000 | XP_057792000.1 |
| 4 | Chromatin | 染色质 | 0.60000 | XP_057792000.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71652098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:71652135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C70 |
Chr2:71652180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B2,B62 |
Chr2:71652258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:71652269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:71652504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B135,C62 |
Chr2:71652759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B132,B94,C12 |
Chr2:71652781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr2:71652891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,B37 |
Chr2:71652975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:71653012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr2:71653036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792000.1PF14826
FACT-Spt16_Nlob 22-188 aa
PF00557
Peptidase_M24 203-435 aa
PF08644
SPT16 553-666 aa
PF24824
PH_SPT16 676-807 aa
PF08512
Rttp106-like_middle 833-920 aa
PF21091
SPT16_C 959-1040 aa
XP_057792001.1PF14826
FACT-Spt16_Nlob 22-188 aa
PF00557
Peptidase_M24 203-435 aa
PF08644
SPT16 553-666 aa
PF24824
PH_SPT16 676-807 aa
PF08512
Rttp106-like_middle 833-920 aa
PF21091
SPT16_C 959-1040 aa
XP_057792002.1PF14826
FACT-Spt16_Nlob 22-188 aa
PF00557
Peptidase_M24 203-435 aa
PF08644
SPT16 553-666 aa
PF24824
PH_SPT16 676-807 aa
PF08512
Rttp106-like_middle 833-920 aa
PF21091
SPT16_C 959-1040 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792000.1 |
Pfam | PF14826 |
FACT-Spt16_Nlob | Domain | 22 | 188 | 7.4e-47 | 159.8 | FACT complex subunit SPT16 N-terminal lobe domain |
XP_057792000.1 |
Pfam | PF00557 |
Peptidase_M24 | Domain | 203 | 435 | 7.6e-32 | 111.5 | Metallopeptidase family M24 |
XP_057792000.1 |
Pfam | PF08644 |
SPT16 | Domain | 553 | 666 | 2.3e-37 | 128.5 | FACT complex subunit (SPT16/CDC68) |
XP_057792000.1 |
Pfam | PF24824 |
PH_SPT16 | Domain | 676 | 807 | 5.2e-54 | 182.4 | FACT complex subunit SPT16 PH-like domain |
XP_057792000.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 833 | 920 | 2.8e-23 | 82.8 | Histone chaperone Rttp106-like, middle domain |
XP_057792000.1 |
Pfam | PF21091 |
SPT16_C | Domain | 959 | 1040 | 7.8e-17 | 62.0 | FACT complex subunit SPT16, C-terminal domain |
XP_057792001.1 |
Pfam | PF14826 |
FACT-Spt16_Nlob | Domain | 22 | 188 | 7.4e-47 | 159.8 | FACT complex subunit SPT16 N-terminal lobe domain |
XP_057792001.1 |
Pfam | PF00557 |
Peptidase_M24 | Domain | 203 | 435 | 7.6e-32 | 111.5 | Metallopeptidase family M24 |
XP_057792001.1 |
Pfam | PF08644 |
SPT16 | Domain | 553 | 666 | 2.3e-37 | 128.5 | FACT complex subunit (SPT16/CDC68) |
XP_057792001.1 |
Pfam | PF24824 |
PH_SPT16 | Domain | 676 | 807 | 5.2e-54 | 182.4 | FACT complex subunit SPT16 PH-like domain |
XP_057792001.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 833 | 920 | 2.8e-23 | 82.8 | Histone chaperone Rttp106-like, middle domain |
XP_057792001.1 |
Pfam | PF21091 |
SPT16_C | Domain | 959 | 1040 | 7.8e-17 | 62.0 | FACT complex subunit SPT16, C-terminal domain |
XP_057792002.1 |
Pfam | PF14826 |
FACT-Spt16_Nlob | Domain | 22 | 188 | 7.4e-47 | 159.8 | FACT complex subunit SPT16 N-terminal lobe domain |
XP_057792002.1 |
Pfam | PF00557 |
Peptidase_M24 | Domain | 203 | 435 | 7.6e-32 | 111.5 | Metallopeptidase family M24 |
XP_057792002.1 |
Pfam | PF08644 |
SPT16 | Domain | 553 | 666 | 2.3e-37 | 128.5 | FACT complex subunit (SPT16/CDC68) |
XP_057792002.1 |
Pfam | PF24824 |
PH_SPT16 | Domain | 676 | 807 | 5.2e-54 | 182.4 | FACT complex subunit SPT16 PH-like domain |
XP_057792002.1 |
Pfam | PF08512 |
Rttp106-like_middle | Domain | 833 | 920 | 2.8e-23 | 82.8 | Histone chaperone Rttp106-like, middle domain |
XP_057792002.1 |
Pfam | PF21091 |
SPT16_C | Domain | 959 | 1040 | 7.8e-17 | 62.0 | FACT complex subunit SPT16, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。