Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004978`

染色体: Chr02 坐标: 71661616-71665960 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004978`
名称	SmilChr02G004978
描述	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71661616 - 71665960 / `+`

ID 对照

NCBI Gene ID	`LOC131008930`
GeneID	`131008930`
locus_tag	`-`
NCBI Name	`LOC131008930`
原始查询	`SmilChr02G004978`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
产物	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
Arabidopsis	`AT5G26760` (AT5G26760) RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832734] identity=54.2; qcov=0.533; evalue=1.87e-107; confidence=medium
Rice	`Os05g0134300` - identity=45.7; qcov=0.559; evalue=3.61e-77; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0008420 (RNA polymerase II CTD heptapeptide repeat phosphatase activity); GO:0043175 (RNA polymerase core enzyme binding)
KEGG	-
Pfam	PF04181 (RPAP2_Rtr1)
InterPro	-
eggNOG	-
NR	GeneID:131008930

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792033.1`
2	Cytosol	细胞质基质	0.80000	`XP_057792033.1`
3	Cytoplasm	细胞质	0.60000	`XP_057792034.1`
4	Chromosome	染色体	0.00000	`XP_057792033.1`
5	Centromere	着丝粒	0.00000	`XP_057792033.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71662173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:71662205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr2:71662332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B44
`Chr2:71662455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:71662488`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B87
`Chr2:71662488`	`AG`	`A`	1bp_deletion	CDS_variant	1	B87
`Chr2:71662590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71662817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71663452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,D1
`Chr2:71663535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:71663819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr2:71663844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792033.1

629 aa

314

629

RPAP2_Rtr1

PF04181 RPAP2_Rtr1 36-108 aa

XP_057792034.1

623 aa

312

623

RPAP2_Rtr1

PF04181 RPAP2_Rtr1 36-108 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792033.1`	Pfam	`PF04181`	RPAP2_Rtr1	Family	36	108	2.8e-23	82.7	Rtr1/RPAP2 family
`XP_057792034.1`	Pfam	`PF04181`	RPAP2_Rtr1	Family	36	108	2.8e-23	82.7	Rtr1/RPAP2 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936050.1
CTTCTTCGGTATTTCTATTTTATCGCCTTCCTATTTCTTCAATCCAAAAGAATTTGGGCCTAAATGTAATTAATTCAAAGATTGAAAAAGCGTTTGGTTTTCTAGTTTTACTGTTCAAAACCTGATCAAAATCCCAAAATGCGTTTGGTTTTTGCAGTATTGTTGAAGCCAATTGGGATTTTGAGTTTTGCAGTAGGGTTGGAGATGCCCTAACTTCAAAAATCTTCTACTTGTCCTCTATCTGGTTCGATCCACTACAC...

XM_057936051.1
CCTTCCTATTTCTTCAATCCAAAAGAATTTGGGCCTAAATGTAATTAATTCAAAGATTGAAAAAGCGTTTGGTTTTCTAGTTTTACTGTTCAAAACCTGATCAAAATCCCAAAATGCGTTTGGTTTTTGCAGTATTGTTGAAGCCAATTGGGATTTTGAGTTTTGCAGTAGGGTTGGAGATGCCCTAACTTCAAAAATCTTCTACTTGTCCTCTATCTGGTTCGATCCACTACACGGAAGACGAGAATTTGAAGGAACAG...

CDS

2 records

下载 CDS FASTA

LOC131008930
ATGGCCAAGGATGAATCACTGACAGTGAAGGATGCAGTTCATAAGCTTCAACTCTTCCTTCTCGATGGAATCAAAGACGACAACCAGCTATTAGCTGCTGGTTCAGTGATATCCCGAGATGATTACAACGATGTAGTCACCGAGCGCACGATAGCTGAAATGTGCGGTTACCCGCTCTGCGCCAACCCATTGCCATCCGAGCGGCCGCACAAGGGGCGTTACCGCATCTCACTCAAGGAGCATAAAGTCTACGACCTTCA...

Protein

2 records

下载 Protein FASTA

XP_057792033.1
MAKDESLTVKDAVHKLQLFLLDGIKDDNQLLAAGSVISRDDYNDVVTERTIAEMCGYPLCANPLPSERPHKGRYRISLKEHKVYDLQETYMYCSSNCLINSRAFAANLQEERSSALNPAKLNRILKLFESLSSETAVDMGKNGDLGFSELKIQEKTDREAGNRSLEEWIGPSNAIDGYVPRSDKNLDSHQSHNDRKGGKQGKGPKHRLSDPNAQDIMSFEMNFTSTIITQDEYSVSKAAPTMRANESRGKLRTKTVNCDK...

XP_057792034.1
MAKDESLTVKDAVHKLQLFLLDGIKDDNQLLAAGSVISRDDYNDVVTERTIAEMCGYPLCANPLPSERPHKGRYRISLKEHKVYDLQETYMYCSSNCLINSRAFAANLQEERSSALNPAKLNRILKLFESLSSETAVDMGKNGDLGFSELKIQEKTDREAGNRSLEEWIGPSNAIDGYVPRSDKNLDSHQSHNDRKGPKHRLSDPNAQDIMSFEMNFTSTIITQDEYSVSKAAPTMRANESRGKLRTKTVNCDKKEIQPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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