Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004986`

染色体: Chr02 坐标: 71738181-71743056 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004986`
名称	SmilChr02G004986
描述	ADP-ribosylation factor 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71738181 - 71743056 / `+`

ID 对照

NCBI Gene ID	`LOC131009037`
GeneID	`131009037`
locus_tag	`-`
NCBI Name	`LOC131009037`
原始查询	`SmilChr02G004986`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor 1-like
产物	ADP-ribosylation factor 1-like
Arabidopsis	`AT5G14670` (ARFA1B) ADP-ribosylation factor A1B [Source:NCBI gene (formerly Entrezgene);Acc:831319] identity=97.3; qcov=0.979; evalue=1.03e-133; confidence=high
Rice	`Os05g0489600` (ARF) - identity=98.3; qcov=0.963; evalue=1.06e-133; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131009037

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057792222.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057792222.1`
3	Endosome	内体	1.00000	`XP_057792223.1`
4	Vesicle	囊泡	0.80000	`XP_057792222.1`
5	Cytosol	细胞质基质	0.60000	`XP_057792222.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71740113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:71740140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B73,C85
`Chr2:71740201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:71740239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B78,C60,C9
`Chr2:71742446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:71742728`	`CAA`	`C`	2bp_deletion	frameshift_variant	60	A10,A15,A19,A2,A20,A22,A24,A3,A6,A7,B108,B13,B131,B132,B138,B17,B19,B2,B40,B42,B43,B46,B50,B58,B6,B63,B65,B67,B68,B69,B7,B74,B78,B87,B90,B92,B93,B98,C13,C16,C17,C2,C26,C36,C40,C41,C42,C43,C50,C54,C60,C65,C67,C72,C78,C83,C9,D11,D3,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792222.1

199 aa

100

199

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 16-188 aa PF09439 SRPRB 27-154 aa PF01926 MMR_HSR1 30-133 aa PF08477 Roc 30-140 aa PF04670 Gtr1_RagA 30-152 aa PF00071 Ras 30-184 aa

XP_057792223.1

192 aa

192

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 16-188 aa PF09439 SRPRB 27-154 aa PF01926 MMR_HSR1 30-133 aa PF08477 Roc 30-140 aa PF04670 Gtr1_RagA 30-152 aa PF00071 Ras 30-184 aa

XP_057792224.1

188 aa

188

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792222.1`	Pfam	`PF00025`	Arf	Domain	16	188	1.7e-81	272.5	ADP-ribosylation factor family
`XP_057792222.1`	Pfam	`PF09439`	SRPRB	Domain	27	154	5.8e-13	49.3	Signal recognition particle receptor beta subunit
`XP_057792222.1`	Pfam	`PF01926`	MMR_HSR1	Family	30	133	8.4e-05	23.4	50S ribosome-binding GTPase
`XP_057792222.1`	Pfam	`PF08477`	Roc	Domain	30	140	8.9e-14	52.5	Ras of Complex, Roc, domain of DAPkinase
`XP_057792222.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	30	152	2e-09	38.0	Gtr1/RagA G protein conserved region
`XP_057792222.1`	Pfam	`PF00071`	Ras	Domain	30	184	6.9e-12	46.0	Ras family
`XP_057792223.1`	Pfam	`PF00025`	Arf	Domain	16	188	1.5e-81	272.7	ADP-ribosylation factor family
`XP_057792223.1`	Pfam	`PF09439`	SRPRB	Domain	27	154	5.2e-13	49.5	Signal recognition particle receptor beta subunit
`XP_057792223.1`	Pfam	`PF01926`	MMR_HSR1	Family	30	133	7.7e-05	23.5	50S ribosome-binding GTPase
`XP_057792223.1`	Pfam	`PF08477`	Roc	Domain	30	140	8.2e-14	52.6	Ras of Complex, Roc, domain of DAPkinase
`XP_057792223.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	30	152	1.8e-09	38.1	Gtr1/RagA G protein conserved region
`XP_057792223.1`	Pfam	`PF00071`	Ras	Domain	30	184	6.2e-12	46.1	Ras family
`XP_057792224.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.4e-81	272.8	ADP-ribosylation factor family
`XP_057792224.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.9e-13	49.5	Signal recognition particle receptor beta subunit
`XP_057792224.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	7.2e-05	23.6	50S ribosome-binding GTPase
`XP_057792224.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.7e-14	52.7	Ras of Complex, Roc, domain of DAPkinase
`XP_057792224.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.7e-09	38.1	Gtr1/RagA G protein conserved region
`XP_057792224.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.9e-12	46.2	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936240.1
TGGAAATGTTTTTTTCCACCTCATTCCAAGATGAGCTAGCTTTTATCTCAAAAGAATTAAATATAACCCAAAAATTAATATTCCACGTCGCCTTCTTCTTCCCCATTTCTAAAAGACTAGTGTTTCCAATTTGTTGTTGCCATTGAGCTCGAAGCTGTACCTCTCGTCTCAATATTTGCTTCATTGGTGTCACATTCCTCCAGTATTTGCAGCCGCATGCTGGGACGCCATTCTCGCTATCACGCAACAAACAAATGCCA...

XM_057936239.1
CATTGAGCTCGAAGCTGTACCTCTCGTCTCAATATTTGCTTCATTGGTGTCACATTCCTCCAGTATTTGCAGCCGCATGCTGGGACGCCATTCTCGCTATCACGCAACAAACAAATGCCACAAATTATAACTACCTCTCTATTTAAAAAACATCGACAAAAGCATTTCCTGATTTCTCCGTTATTTCCTTAATGAAGAAATCCTTAGTTCGATTCTCACAGAAAATGGGGTTGTCTTTCACCAAGCTTTTTAGCCGGCTG...

CDS

3 records

下载 CDS FASTA

LOC131009037
ATGAAGAAATCCTTAGTTCGATTCTCACAGAAAATGGGGTTGTCTTTCACCAAGCTTTTTAGCCGGCTGTTTGCCAAGAAGGAGATGCGAATTCTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACGATATTGTATAAACTCAAGTTGGGAGAAATAGTGACAACAATTCCTACAATCGGTTTCAATGTGGAGACAGTTGAATACAAGAACATAAGCTTCACTGTTTGGGATGTTGGTGGTCAAGATAAGATTCGACC...

Protein

3 records

下载 Protein FASTA

XP_057792222.1
MKKSLVRFSQKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVGSVKFLE

XP_057792223.1
MKKSLVRFSQKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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