Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004996`

染色体: Chr02 坐标: 71795658-71799342 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004996`
名称	SmilChr02G004996
描述	alkaline/neutral invertase A, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71795658 - 71799342 / `+`

ID 对照

NCBI Gene ID	`LOC131008928`
GeneID	`131008928`
locus_tag	`-`
NCBI Name	`LOC131008928`
原始查询	`SmilChr02G004996`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alkaline/neutral invertase A, mitochondrial
产物	alkaline/neutral invertase A%2C mitochondrial
Arabidopsis	`AT1G56560` (A/N-InvA) Plant neutral invertase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842110] identity=74.7; qcov=0.867; evalue=0; confidence=high
Rice	`Os03g0314800` (OsNIN1) - identity=78.5; qcov=0.755; evalue=0; confidence=high
GO	GO:0004575 (sucrose alpha-glucosidase activity); GO:0005739 (mitochondrion); GO:0005987 (sucrose catabolic process); GO:0033926 (endo-alpha-N-acetylgalactosaminidase activity)
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF12899 (Glyco_hydro_100)
InterPro	-
eggNOG	-
NR	GeneID:131008928

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057792031.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057792031.1`
3	Nucleus	细胞核	0.00000	`XP_057792031.1`
4	Chromosome	染色体	0.00000	`XP_057792031.1`
5	Centromere	着丝粒	0.00000	`XP_057792031.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71795993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B35,B55,C23
`Chr2:71796044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr2:71796058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr2:71796264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,A9,C36
`Chr2:71796277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:71796330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B133
`Chr2:71796347`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B42,B43
`Chr2:71796383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:71796396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B42,B43
`Chr2:71796512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B44,B51,B68,D5
`Chr2:71796548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:71796588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B44,B51,B68,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792031.1

653 aa

326

653

Glyco_hydro_100

PF12899 Glyco_hydro_100 173-612 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792031.1`	Pfam	`PF12899`	Glyco_hydro_100	Repeat	173	612	7.3e-223	740.8	Alkaline and neutral invertase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936048.1
AAAAAAGAAAAAGAAAAAAGAAAGTCCGCCGCTAACCGCCCAATACAAAATTTCCCACGAGTTCCAAGAATGAAGAATCTATGAATCCCTATTTATATTTGTTTGGCTTCCCCCTTCATTTCTGAATTATCTTCTCCGCAATCCCTTCCCCTCTTCCCATTTCTGCAATCCCTTTTTTGTTGTTTTTCTACTTTTTATTTTTATTATTCGGATTAACTAATTCTTCGCTCCACAACATCTCATTAATCTTTCCCGCAACT...

CDS

1 records

下载 CDS FASTA

LOC131008928
ATGAACGCTATATTCAAATTCACGAGCATGAAGCCGCCATGTTGCAGAATCTTGTTGCCCTCCAAGAACACCCCTTTTATGGGCGCCCCTCTCCCCAAACCCTCTAATTTCCGATCGAATATTAATTATTTCCCCGCTTCTCGATTTCATACCTCTCCGCCGGCTTCTTTGGGGTTGAAATCGGCATTGACTTGGACGTGGGGCCAATCGAGAATCTTCTCGAGCTCCTGCTATTCCAGTTTCAGCAGGAGGGCGAGGAC...

Protein

1 records

下载 Protein FASTA

XP_057792031.1
MNAIFKFTSMKPPCCRILLPSKNTPFMGAPLPKPSNFRSNINYFPASRFHTSPPASLGLKSALTWTWGQSRIFSSSCYSSFSRRARTHFFAPRAAADLRNLSASVESSVNDKNFDRVYVQGRVNVKPPPLPAEEEVGEEEKSNADAAICGDVGKNECSFVEVGKEESEVEKEAWKLLRNAIVTYCGSPVGTVAANDPNDKSPLNYDQVFIRDFVPSAFAFLLKGEGEIVRNFLLDTLQLQSWEKTVDCYSPGQGLMPASF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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