Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004997`

染色体: Chr02 坐标: 71801042-71803192 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004997`
名称	SmilChr02G004997
描述	putative pentatricopeptide repeat-containing protein At1g56570
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	71801042 - 71803192 / `+`

ID 对照

NCBI Gene ID	`LOC131008936`
GeneID	`131008936`
locus_tag	`-`
NCBI Name	`LOC131008936`
原始查询	`SmilChr02G004997`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g56570
产物	putative pentatricopeptide repeat-containing protein At1g56570
Arabidopsis	`AT1G56570` (PGN) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842111] identity=54.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0299200` - identity=47.9; qcov=0.643; evalue=1.62e-129; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131008936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792039.1`
2	Nucleus	细胞核	0.00000	`XP_057792039.1`
3	Chromosome	染色体	0.00000	`XP_057792039.1`
4	Centromere	着丝粒	0.00000	`XP_057792039.1`
5	Chromatin	染色质	0.00000	`XP_057792039.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:71801306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,A9,B111,B133
`Chr2:71801450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,C51,D4
`Chr2:71801523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:71801525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:71801641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B7,B70,B93,C38
`Chr2:71801771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:71801801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:71801949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr2:71802126`	`C`	`T`	EMS_canonical_SNV	stop_gained	10	A5,B137,B48,B76,B90,B92,C4,C54,C62,D8
`Chr2:71802166`	`G`	`A`	EMS_canonical_SNV	stop_gained	13	B110,B12,B35,B55,B64,B76,B90,B92,B94,B96,C21,C4,D4
`Chr2:71802173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B36,B80,B95,C84
`Chr2:71802268`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792039.1

591 aa

296

591

PPR

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

E_motif

PF01535 PPR 38-64 aa PF13041 PPR_2 63-109 aa PF01535 PPR 66-91 aa PF01535 PPR 167-193 aa PF01535 PPR 239-267 aa PF13041 PPR_2 265-312 aa PF01535 PPR 268-281 aa PF01535 PPR 340-367 aa PF13041 PPR_2 365-413 aa PF01535 PPR 368-398 aa PF01535 PPR 404-429 aa PF01535 PPR 440-464 aa PF20431 E_motif 487-542 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	38	64	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF13041`	PPR_2	Repeat	63	109	7.3e-58	193.2	PPR repeat family
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	66	91	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	167	193	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	239	267	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF13041`	PPR_2	Repeat	265	312	7.3e-58	193.2	PPR repeat family
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	268	281	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	340	367	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF13041`	PPR_2	Repeat	365	413	7.3e-58	193.2	PPR repeat family
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	368	398	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	404	429	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF01535`	PPR	Repeat	440	464	7.5e-46	151.9	PPR repeat
`XP_057792039.1`	Pfam	`PF20431`	E_motif	Repeat	487	542	8.1e-08	33.1	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936056.1
AGTTAGTCTAACTGTCTAAGTTTGGACACAAATGTGTATCAATTCAAACTAAAACTAGTCTTAAAATTTATTTGCATTTCAGAATTTTATCAATCGTCAAATTGCAAATACAGATTTAATTATTTTGAATTGATATAACTAAACAGTCTAAACTGTTTTTTATCACATTTTCCATTGAAAGTGTAATTGAATTCATTCCAAAATTGCAGAGTGGTGAGCACAAGAAATGAGATCAAGAAAGCTAGTCCATCTCCCTTGTT...

CDS

1 records

下载 CDS FASTA

LOC131008936
ATGAGATCAAGAAAGCTAGTCCATCTCCCTTGTTGTCTGACTCCCAGATTCCCCAACTCACCAACCCATTCGAGCTCCGCATTTTCCCCCAAACCCCCTTCAGTCCTCGCCACAAATGTCATGAAATCATACTTGGAGGCGGGCCTCGTGGAGGAAGCCCGCACCCTGTTCGACGAAATGCCCGACCGAGACGTGGTGGCTTGGTCCGCCATGATCAGCGGCTACACCTCCTGCAACCGCCCCGCCGACGCCTGGGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057792039.1
MRSRKLVHLPCCLTPRFPNSPTHSSSAFSPKPPSVLATNVMKSYLEAGLVEEARTLFDEMPDRDVVAWSAMISGYTSCNRPADAWATFRDMLPDVRPNDFTFSSVLKACKSMNSLPRGAVAHALALRHGFLGSIYVANALVDMYAACCRDMDSARAAFDEIGVKNSVTWTTLIAGYTHMGDGHGGLDVFRRMLLEDAELNPFNVSIAIRACTWIGSQSFGKQIHSTVFKHGFESNIPVMNSVLDMYCRCIGLNDADRCFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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