当前解析结果
SmilChr02G005019| 统一新 Gene ID | SmilChr02G005019 |
|---|---|
| 名称 | SmilChr02G005019 |
| 描述 | uncharacterized SmilChr02G005019 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71961577 - 71965484 / + |
| NCBI Gene ID | LOC131008941 |
|---|---|
| GeneID | 131008941 |
| locus_tag | - |
| NCBI Name | LOC131008941 |
| 原始查询 | SmilChr02G005019 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | HIT zinc finger and PAPA-1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842099]; symbol=AT1G56460; hit=AT1G56460; species=arabidopsis; confidence=medium |
| 产物 | HIT zinc finger and PAPA-1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842099]; symbol=AT1G56460; hit=AT1G56460; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G56460 (AT1G56460)HIT zinc finger and PAPA-1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842099] identity=38.6; qcov=1.01; evalue=2.49e-79; confidence=medium |
| Rice | Os12g0561200- identity=57.4; qcov=0.378; evalue=3.29e-69; confidence=low |
| GO | GO:0006338 (chromatin remodeling); GO:0031011 (Ino80 complex) |
| KEGG | - |
| Pfam | PF04438 (zf-HIT); PF04795 (PAPA-1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008941 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792046.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792046.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792046.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792046.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792046.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71963034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B110,B130,B138 |
Chr2:71963065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C55 |
Chr2:71963209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C82 |
Chr2:71963254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr2:71963283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B77,C34,C87 |
Chr2:71963325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:71963366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,C39 |
Chr2:71963396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:71963917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr2:71963937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B66,B71,C62 |
Chr2:71963952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B66,B71,C62 |
Chr2:71963960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B66,B71,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792046.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
XP_057792047.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
XP_057792048.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
XP_057792049.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
XP_057792050.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
XP_057792051.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
XP_057792052.1PF04795
PAPA-1 414-498 aa
PF04438
zf-HIT 515-546 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792046.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792046.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
XP_057792047.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792047.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
XP_057792048.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792048.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
XP_057792049.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792049.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
XP_057792050.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792050.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
XP_057792051.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792051.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
XP_057792052.1 |
Pfam | PF04795 |
PAPA-1 | Family | 414 | 498 | 2e-21 | 77.3 | PAPA-1-like conserved region |
XP_057792052.1 |
Pfam | PF04438 |
zf-HIT | Domain | 515 | 546 | 1.2e-06 | 28.9 | HIT zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA7 records
下载 CDS FASTA7 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。