当前解析结果
SmilChr02G005021| 统一新 Gene ID | SmilChr02G005021 |
|---|---|
| 名称 | SmilChr02G005021 |
| 描述 | calreticulin-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71968667 - 71972635 / - |
| NCBI Gene ID | LOC131008957 |
|---|---|
| GeneID | 131008957 |
| locus_tag | - |
| NCBI Name | LOC131008957 |
| 原始查询 | SmilChr02G005021 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calreticulin-like |
| 产物 | calreticulin-like |
| Arabidopsis | AT1G09210 (CRT1b)calreticulin 1b [Source:NCBI gene (formerly Entrezgene);Acc:837441] identity=85.6; qcov=0.872; evalue=0; confidence=high |
| Rice | Os07g0246200 (CRO1)calreticulin-like [Source:NCBI gene (formerly Entrezgene);Acc:4342826] identity=86.5; qcov=0.793; evalue=0; confidence=high |
| GO | GO:0005509 (calcium ion binding); GO:0005783 (endoplasmic reticulum); GO:0005789 (endoplasmic reticulum membrane); GO:0006457 (protein folding); GO:0030433 (GO:0030433); GO:0051082 (GO:0051082) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00262 (Calreticulin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008957 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792088.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 1.00000 | XP_057792088.1 |
| 3 | Melanosome | Melanosome | 0.40000 | XP_057792088.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792088.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71968983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C39 |
Chr2:71969401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C82 |
Chr2:71969561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B68,C38,C85 |
Chr2:71969859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:71970413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C55 |
Chr2:71970470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,C48,C55 |
Chr2:71970542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B12,C70 |
Chr2:71970682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr2:71970826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,A5,B109,B44 |
Chr2:71971019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:71971031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:71972342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792088.1PF00262
Calreticulin 33-268 aa
PF00262
Calreticulin 270-343 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792088.1 |
Pfam | PF00262 |
Calreticulin | Family | 33 | 268 | 7e-81 | 272.7 | Calreticulin family |
XP_057792088.1 |
Pfam | PF00262 |
Calreticulin | Family | 270 | 343 | 7e-81 | 272.7 | Calreticulin family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。