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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005036

染色体: Chr02 坐标: 72062039-72069536 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005036
名称SmilChr02G005036
描述calmodulin-binding protein 60 B-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向72062039 - 72069536 / -

ID 对照

NCBI Gene IDLOC131008966
GeneID131008966
locus_tag-
NCBI NameLOC131008966
原始查询SmilChr02G005036

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calmodulin-binding protein 60 B-like
产物calmodulin-binding protein 60 B-like
ArabidopsisAT4G25800 (AT4G25800)
Calmodulin-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828685]
identity=43.3; qcov=0.859; evalue=2.61e-78; confidence=medium
RiceOs02g0177800
-
identity=40; qcov=0.928; evalue=1.31e-79; confidence=medium
GOGO:0003700 (DNA-binding transcription factor activity); GO:0005516 (calmodulin binding); GO:0005634 (nucleus); GO:0043565 (sequence-specific DNA binding); GO:0080142 (regulation of salicylic acid biosynthetic process)
KEGG-
PfamPF07887 (Calmodulin_bind); PF20451 (Calmod_bind_M); PF20452 (Calmod_bind_C)
InterPro-
eggNOG-
NRGeneID:131008966

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057792100.1
2 Chromosome 染色体 0.00000 XP_057792100.1
3 Centromere 着丝粒 0.00000 XP_057792100.1
4 Chromatin 染色质 0.00000 XP_057792100.1
5 Telomere 端粒 0.00000 XP_057792100.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:72062398 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:72062453 C T EMS_canonical_SNV CDS_variant 1 C74
Chr2:72062575 G A EMS_canonical_SNV CDS_variant 2 B61,C8
Chr2:72062700 G A EMS_canonical_SNV CDS_variant 2 B11,C6
Chr2:72062966 G A EMS_canonical_SNV CDS_variant 1 B131
Chr2:72063031 C T EMS_canonical_SNV CDS_variant 1 C84
Chr2:72063672 G A EMS_canonical_SNV CDS_variant 1 C82
Chr2:72063680 C T EMS_canonical_SNV CDS_variant 5 B111,B45,B47,B51,C39
Chr2:72063731 G A EMS_canonical_SNV CDS_variant 5 B61,B71,C4,C5,C8
Chr2:72063744 G A EMS_canonical_SNV CDS_variant 3 C74,D10,D11
Chr2:72063785 C T EMS_canonical_SNV CDS_variant 5 B61,B71,C4,C5,C8
Chr2:72063792 C T EMS_canonical_SNV CDS_variant 3 C74,D1,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792100.1
407 aa
N
1
204
407
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 76-214 aa PF20451 Calmod_bind_M 227-290 aa PF20452 Calmod_bind_C 297-354 aa
XP_057792101.1
406 aa
N
1
203
406
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 75-213 aa PF20451 Calmod_bind_M 226-289 aa PF20452 Calmod_bind_C 296-353 aa
XP_057792102.1
391 aa
N
1
196
391
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 76-214 aa PF20451 Calmod_bind_M 227-290 aa PF20452 Calmod_bind_C 297-354 aa
XP_057792103.1
390 aa
N
1
195
390
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 75-213 aa PF20451 Calmod_bind_M 226-289 aa PF20452 Calmod_bind_C 296-353 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792100.1 Pfam PF07887 Calmodulin_bind Domain 76 214 1e-43 149.7 Calmodulin binding protein-like N-terminal domain
XP_057792100.1 Pfam PF20451 Calmod_bind_M Domain 227 290 5.2e-19 69.3 Calmodulin binding protein central domain
XP_057792100.1 Pfam PF20452 Calmod_bind_C Domain 297 354 9.4e-16 58.4 Calmodulin binding protein C-terminal domain
XP_057792101.1 Pfam PF07887 Calmodulin_bind Domain 75 213 9.9e-44 149.7 Calmodulin binding protein-like N-terminal domain
XP_057792101.1 Pfam PF20451 Calmod_bind_M Domain 226 289 5.2e-19 69.3 Calmodulin binding protein central domain
XP_057792101.1 Pfam PF20452 Calmod_bind_C Domain 296 353 9.4e-16 58.4 Calmodulin binding protein C-terminal domain
XP_057792102.1 Pfam PF07887 Calmodulin_bind Domain 76 214 9.1e-44 149.8 Calmodulin binding protein-like N-terminal domain
XP_057792102.1 Pfam PF20451 Calmod_bind_M Domain 227 290 4.9e-19 69.4 Calmodulin binding protein central domain
XP_057792102.1 Pfam PF20452 Calmod_bind_C Domain 297 354 8.9e-16 58.5 Calmodulin binding protein C-terminal domain
XP_057792103.1 Pfam PF07887 Calmodulin_bind Domain 75 213 9.1e-44 149.9 Calmodulin binding protein-like N-terminal domain
XP_057792103.1 Pfam PF20451 Calmod_bind_M Domain 226 289 4.9e-19 69.4 Calmodulin binding protein central domain
XP_057792103.1 Pfam PF20452 Calmod_bind_C Domain 296 353 8.9e-16 58.5 Calmodulin binding protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057936120.1
CCATTAATTTTAAATAGTTTGCATTTGCAGCATATATTCTCACATAGTAATATTTTGATTCATGGCACTAAAACGACAGCTCCGTGAGGGGGGTGACGGCGACGGAGATTCCCAACTCGGGAATAAACGTCGCCATTTACTCTCAACTTTATTCAGCAGATTTCGGAATCCTGAAGAATTTGTTCCCATGTTGGAACCGATCCTTCGAAAATGGGTGAAAGAGGAGGTGGGGCGTGCAATTGATCCTTATTTGAGATCCT...
XM_057936118.1
TTTGCAGCATATATTCTCACATAGTAATATTTTGATTCATGGCACTAAAACGACAGCTCCGTGAGGGGGGTGACGGCGACGGAGATTCCCAACTCGGGAATAAACGTCGCCATTTACTCTCAACTTTATTCAGCAGATTTCGGAATCCTGAAGAATTTGTTCCCATGTTGGAACCGATCCTTCGAAAATGGGTGAAAGAGGAGGTGGGGCGTGCAATTGATCCTTATTTGAGATCCTTGGATGCTCAAAGTGAGAGGAAT...

CDS

4 records

下载 CDS FASTA
LOC131008966
ATGGCACTAAAACGACAGCTCCGTGAGGGGGGTGACGGCGACGGAGATTCCCAACTCGGGAATAAACGTCGCCATTTACTCTCAACTTTATTCAGCAGATTTCGGAATCCTGAAGAATTTGTTCCCATGTTGGAACCGATCCTTCGAAAATGGGTGAAAGAGGAGGTGGGGCGTGCAATTGATCCTTATTTGAGATCCTTGGATGCTCAAAGTGAGAGGAATCTGCATTTGAAGTTCGAGAGCAGCTTGCCCACCACTCT...
LOC131008966
ATGGCACTAAAACGACAGCTCCGTGAGGGGGGTGACGGCGACGGAGATTCCCAACTCGGGAATAAACGTCGCCATTTACTCTCAACTTTATTCAGCAGATTTCGGAATCCTGAAGAATTTGTTCCCATGTTGGAACCGATCCTTCGAAAATGGGTGAAAGAGGAGGTGGGGCGTGCAATTGATCCTTATTTGAGTAGATCCTTGGATGCTCAAAGTGAGAGGAATCTGCATTTGAAGTTCGAGAGCAGCTTGCCCACCAC...

Protein

4 records

下载 Protein FASTA
XP_057792100.1
MALKRQLREGGDGDGDSQLGNKRRHLLSTLFSRFRNPEEFVPMLEPILRKWVKEEVGRAIDPYLSRSLDAQSERNLHLKFESSLPTTLFTGNRISTKIALYDPSCQSIVASGPHSSIKVAVVALHGDFAADDEWSPEEFEAKIVQSRQGKRPLLNGDSVVALKNGVANIDHICFTDNSSWGRSGKFRLGVRLPPGSHEPCVREGVSNAFKVKDQRGESYQKHHPPSLDDEVWRLEKIAKGGAYHTHLTKLGIANVGDFLR...
XP_057792101.1
MALKRQLREGGDGDGDSQLGNKRRHLLSTLFSRFRNPEEFVPMLEPILRKWVKEEVGRAIDPYLRSLDAQSERNLHLKFESSLPTTLFTGNRISTKIALYDPSCQSIVASGPHSSIKVAVVALHGDFAADDEWSPEEFEAKIVQSRQGKRPLLNGDSVVALKNGVANIDHICFTDNSSWGRSGKFRLGVRLPPGSHEPCVREGVSNAFKVKDQRGESYQKHHPPSLDDEVWRLEKIAKGGAYHTHLTKLGIANVGDFLRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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