Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005049`

染色体: Chr02 坐标: 72222697-72225713 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005049`
名称	SmilChr02G005049
描述	probable protein phosphatase 2C 34
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72222697 - 72225713 / `+`

ID 对照

NCBI Gene ID	`LOC131009000`
GeneID	`131009000`
locus_tag	`-`
NCBI Name	`LOC131009000`
原始查询	`SmilChr02G005049`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein phosphatase 2C 34
产物	probable protein phosphatase 2C 34
Arabidopsis	`AT3G05640` (AT3G05640) Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:819731] identity=65.1; qcov=0.96; evalue=3.73e-152; confidence=high
Rice	`Os05g0358500` (OsPP2C48) - identity=60.3; qcov=0.96; evalue=1.58e-130; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation)
KEGG	-
Pfam	PF00481 (PP2C)
InterPro	-
eggNOG	-
NR	GeneID:131009000

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057792163.1`
2	Nucleus	细胞核	0.40000	`XP_057792163.1`
3	Cytoplasm	细胞质	0.40000	`XP_057792163.1`
4	Chromosome	染色体	0.00000	`XP_057792163.1`
5	Centromere	着丝粒	0.00000	`XP_057792163.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72223012`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B4
`Chr2:72223012`	`AC`	`A`	1bp_deletion	CDS_variant	1	B4
`Chr2:72223099`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A21
`Chr2:72223099`	`GC`	`G`	1bp_deletion	CDS_variant	1	A21
`Chr2:72223517`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D1
`Chr2:72223517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr2:72223547`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B25,B34,C35
`Chr2:72223602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B98,C47,C70
`Chr2:72224973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,B44
`Chr2:72224978`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D3
`Chr2:72224978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:72225097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B101,B122,B123,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792163.1

325 aa

162

325

PP2C

PF00481 PP2C 42-293 aa

XP_057792164.1

325 aa

162

325

PP2C

PF00481 PP2C 42-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792163.1`	Pfam	`PF00481`	PP2C	Family	42	293	9.6e-41	140.8	Protein phosphatase 2C
`XP_057792164.1`	Pfam	`PF00481`	PP2C	Family	42	293	9.6e-41	140.8	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936180.1
TGCGTATGTATGTGTGTATCTTTAAAACGACTTACAAAAACTCACAACAACAAAAATCCATCTCTGCTAAAACCGCCGGAGTTTCGTCGTTTCTCGTCAACTGACGTCATCTTTCCGATCACACCAACAACCCTAGCTAGCTCATTCACTTTGTGGTGTGCAGCAGCAGTATGGGGAATGTATCAACAATTTTGAGGAGAAGAAGGAGAAAAGCAAAAGACGAGTTTGTATTGAGGAGTTCAGGCAGTCTCAGCATTCAT...

XM_057936181.1
GTATGTATGTGTGTATCTTTAAAACGACTTACAAAAACTCACAACAACAAAAATCCATCTCTGCTAAAACCGCCGGAGTTTCGTCGTTTCTCGTCAACTGACGTCATCTTTCCGATCACACCAACAACCCTAGCTAGCTCATTCACTCAGCAGTATGGGGAATGTATCAACAATTTTGAGGAGAAGAAGGAGAAAAGCAAAAGACGAGTTTGTATTGAGGAGTTCAGGCAGTCTCAGCATTCATGGCTCTAACAATTTGG...

CDS

2 records

下载 CDS FASTA

LOC131009000
ATGGGGAATGTATCAACAATTTTGAGGAGAAGAAGGAGAAAAGCAAAAGACGAGTTTGTATTGAGGAGTTCAGGCAGTCTCAGCATTCATGGCTCTAACAATTTGGCTTCTGTTTTCTCCAGGAGAGGCCAGAAGGGCCCCAACCAAGACCGCTGCATTGTTTGGGAGGAATTCGGAGGGGAAGAAGACATGATGTTTTGCGGGATATTTGATGGGCATGGTCCATGGGGCCATTTCGTGGCCAAGAAAGTGAGAGACTC...

Protein

2 records

下载 Protein FASTA

XP_057792163.1
MGNVSTILRRRRRKAKDEFVLRSSGSLSIHGSNNLASVFSRRGQKGPNQDRCIVWEEFGGEEDMMFCGIFDGHGPWGHFVAKKVRDSMPCALLRNWQHALLEASDKKQKLHHIWNHSYLNTCAAIDQELRHHRTVDSFYSGTTALTIVRQGDAIFIANVGDCRAVLGTSSQSGNLVAEQLTIDMKPNLPQEAARISECNGRVYSLQDEAGVPRLWLPDEESPGLAMSRAFGDYCAKDFGLTSVPHLTHRDITSNDHFVVI...

XP_057792164.1
MGNVSTILRRRRRKAKDEFVLRSSGSLSIHGSNNLASVFSRRGQKGPNQDRCIVWEEFGGEEDMMFCGIFDGHGPWGHFVAKKVRDSMPCALLRNWQHALLEASDKKQKLHHIWNHSYLNTCAAIDQELRHHRTVDSFYSGTTALTIVRQGDAIFIANVGDCRAVLGTSSQSGNLVAEQLTIDMKPNLPQEAARISECNGRVYSLQDEAGVPRLWLPDEESPGLAMSRAFGDYCAKDFGLTSVPHLTHRDITSNDHFVVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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