当前解析结果
SmilChr02G005053| 统一新 Gene ID | SmilChr02G005053 |
|---|---|
| 名称 | SmilChr02G005053 |
| 描述 | protein AUXIN RESPONSE 4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72239487 - 72242550 / + |
| NCBI Gene ID | LOC131008950 |
|---|---|
| GeneID | 131008950 |
| locus_tag | - |
| NCBI Name | LOC131008950 |
| 原始查询 | SmilChr02G005053 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein AUXIN RESPONSE 4 |
| 产物 | protein AUXIN RESPONSE 4 |
| Arabidopsis | AT1G54990 (AXR4)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841941] identity=50.3; qcov=0.928; evalue=6.55e-144; confidence=high |
| Rice | Os11g0544100- identity=37; qcov=0.754; evalue=7.34e-64; confidence=medium |
| GO | GO:0003824 (catalytic activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008950 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057792078.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057792078.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057792078.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792078.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792078.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72239760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr2:72239766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:72239797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:72239813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72239890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:72240073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B53,C47 |
Chr2:72240131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C40 |
Chr2:72240151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,C58 |
Chr2:72240157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr2:72240210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C58 |
Chr2:72240243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B113 |
Chr2:72240279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B114,B32,C77,D1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。