当前解析结果
SmilChr02G005061| 统一新 Gene ID | SmilChr02G005061 |
|---|---|
| 名称 | SmilChr02G005061 |
| 描述 | ATP-dependent DNA helicase Q-like SIM |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72299359 - 72307057 / + |
| NCBI Gene ID | LOC131008913 |
|---|---|
| GeneID | 131008913 |
| locus_tag | - |
| NCBI Name | LOC131008913 |
| 原始查询 | SmilChr02G005061 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase Q-like SIM |
| 产物 | ATP-dependent DNA helicase Q-like SIM |
| Arabidopsis | AT5G27680 (RECQSIM)RECQ helicase SIM [Source:NCBI gene (formerly Entrezgene);Acc:832830] identity=52.9; qcov=0.995; evalue=0; confidence=high |
| Rice | Os05g0150600- identity=50.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0000724 (double-strand break repair via homologous recombination); GO:0003676 (nucleic acid binding); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005694 (chromosome); GO:0005737 (cytoplasm); GO:0006268 (GO:0006268); GO:0009378 (four-way junction helicase activity); GO:0043138 (3'-5' DNA helicase activity) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF16124 (RecQ_Zn_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008913 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792008.1 |
| 2 | Nucleolus | 核仁 | 0.20000 | XP_057792008.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792012.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792012.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792012.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72300166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,B65 |
Chr2:72300219 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C10 |
Chr2:72300219 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C10 |
Chr2:72300305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B114,B32,D1 |
Chr2:72300394 |
TC |
T |
1bp_deletion | frameshift_variant | 5 | B21,B41,C39,C48,C61 |
Chr2:72300394 |
TC |
T |
1bp_deletion | CDS_variant | 5 | B21,B41,C39,C48,C61 |
Chr2:72300430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:72300450 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | A16,C24 |
Chr2:72300450 |
CA |
C |
1bp_deletion | CDS_variant | 2 | A16,C24 |
Chr2:72300536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:72300601 |
G |
GA |
1bp_insertion | frameshift_variant | 85 | A10,A11,A2,A22,A5,A8,A9,B104,B108,B110,B111,B117,B12,B122,B124,B125,B127,B135,B136,B138,B18,B2,B24,B25,B31,B34,B4,B45,B48,B5,B52,B53,B54,B55,B56,B58,B59,B6,B60,B64,B67,B68,B69,B77,B79,B85,B87,B88,B91,B96,B98,B99,C14,C16,C23,C24,C26,C34,C36,C37,C38,C41,C43,C47,C49,C5,C50,C58,C62,C67,C7,C72,C76,C77,C78,C8,C85,C9,D1,D10,D2,D3,D6,D8,D9 |
Chr2:72300633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792008.1PF00270
DEAD 174-343 aa
PF00271
Helicase_C 510-607 aa
PF16124
RecQ_Zn_bind 627-679 aa
XP_057792010.1PF00270
DEAD 174-343 aa
PF00271
Helicase_C 510-607 aa
PF16124
RecQ_Zn_bind 627-679 aa
XP_057792011.1PF00270
DEAD 174-343 aa
PF00271
Helicase_C 510-607 aa
PF16124
RecQ_Zn_bind 627-679 aa
XP_057792012.1PF00270
DEAD 174-343 aa
PF00271
Helicase_C 510-607 aa
PF16124
RecQ_Zn_bind 627-679 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792008.1 |
Pfam | PF00270 |
DEAD | Domain | 174 | 343 | 1.3e-24 | 87.6 | DEAD/DEAH box helicase |
XP_057792008.1 |
Pfam | PF00271 |
Helicase_C | Domain | 510 | 607 | 4e-17 | 63.2 | Helicase conserved C-terminal domain |
XP_057792008.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 627 | 679 | 3e-09 | 38.2 | RecQ zinc-binding |
XP_057792010.1 |
Pfam | PF00270 |
DEAD | Domain | 174 | 343 | 1.3e-24 | 87.6 | DEAD/DEAH box helicase |
XP_057792010.1 |
Pfam | PF00271 |
Helicase_C | Domain | 510 | 607 | 4e-17 | 63.2 | Helicase conserved C-terminal domain |
XP_057792010.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 627 | 679 | 3e-09 | 38.2 | RecQ zinc-binding |
XP_057792011.1 |
Pfam | PF00270 |
DEAD | Domain | 174 | 343 | 1.3e-24 | 87.6 | DEAD/DEAH box helicase |
XP_057792011.1 |
Pfam | PF00271 |
Helicase_C | Domain | 510 | 607 | 4e-17 | 63.2 | Helicase conserved C-terminal domain |
XP_057792011.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 627 | 679 | 3e-09 | 38.2 | RecQ zinc-binding |
XP_057792012.1 |
Pfam | PF00270 |
DEAD | Domain | 174 | 343 | 1.2e-24 | 87.6 | DEAD/DEAH box helicase |
XP_057792012.1 |
Pfam | PF00271 |
Helicase_C | Domain | 510 | 607 | 3.3e-17 | 63.4 | Helicase conserved C-terminal domain |
XP_057792012.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 627 | 679 | 2.7e-09 | 38.4 | RecQ zinc-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。