当前解析结果
SmilChr02G005062| 统一新 Gene ID | SmilChr02G005062 |
|---|---|
| 名称 | SmilChr02G005062 |
| 描述 | heavy metal-associated isoprenylated plant protein 35-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72310774 - 72312312 / + |
| NCBI Gene ID | LOC131009011 |
|---|---|
| GeneID | 131009011 |
| locus_tag | - |
| NCBI Name | LOC131009011 |
| 原始查询 | SmilChr02G005062 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 35-like |
| 产物 | heavy metal-associated isoprenylated plant protein 35-like |
| Arabidopsis | AT1G56210 (AT1G56210)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842074] identity=35.1; qcov=1.1; evalue=8.54e-27; confidence=medium |
| Rice | Os01g0125600 (P0044F08.14)- identity=50.6; qcov=0.259; evalue=2.87e-22; confidence=weak |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00403 (HMA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009011 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792178.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057792178.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057792178.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057792178.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792178.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72311116 |
GCT |
G |
2bp_deletion | frameshift_variant | 115 | A1,A10,A14,A15,A18,A20,A22,A23,A25,A5,A6,A7,B100,B103,B107,B109,B110,B114,B115,B121,B126,B128,B129,B131,B133,B137,B138,B17,B2,B20,B21,B26,B27,B28,B29,B3,B34,B35,B36,B37,B38,B39,B41,B42,B43,B44,B47,B48,B54,B55,B56,B58,B61,B64,B66,B71,B79,B8,B84,B88,B89,B90,B94,B96,B98,B99,C13,C15,C16,C19,C2,C22,C24,C25,C26,C27,C29,C31,C34,C37,C39,C4,C41,C45,C47,C5,C50,C52,C54,C57,C6,C61,C63,C64,C67,C7,C70,C71,C72,C74,C76,C77,C78,C79,C82,C84,C85,D1,D10,D11,D3,D5,D7,D8,D9 |
Chr2:72311133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C50 |
Chr2:72311280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:72311302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,B44,C34,C78 |
Chr2:72311426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B106,C19 |
Chr2:72311428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,B55 |
Chr2:72311433 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B37,B71,C13,C19,C26,C82,C83 |
Chr2:72311457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D1,D10 |
Chr2:72311482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,B55 |
Chr2:72311507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B71,C13,C19,C82,C83 |
Chr2:72311511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B71,C13,C19,C82,C83 |
Chr2:72311532 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A1,A14,A25,B109,B120,B2,B35,B55,B94,B99,C16,C27,C41,C5,C61,C62,C84,D1,D10,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792178.1PF00403
HMA 21-70 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792178.1 |
Pfam | PF00403 |
HMA | Domain | 21 | 70 | 3.2e-14 | 53.8 | Heavy-metal-associated domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。