当前解析结果
SmilChr02G005078| 统一新 Gene ID | SmilChr02G005078 |
|---|---|
| 名称 | SmilChr02G005078 |
| 描述 | bidirectional sugar transporter SWEET17-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72406534 - 72412628 / - |
| NCBI Gene ID | LOC131009076 |
|---|---|
| GeneID | 131009076 |
| locus_tag | - |
| NCBI Name | LOC131009076 |
| 原始查询 | SmilChr02G005078 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bidirectional sugar transporter SWEET17-like |
| 产物 | bidirectional sugar transporter SWEET17-like |
| Arabidopsis | AT4G15920 (SWEET17)Nodulin MtN3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827274] identity=64.9; qcov=0.87; evalue=7.29e-92; confidence=high |
| Rice | Os02g0513100 (OsSWEET15)- identity=43.5; qcov=0.866; evalue=1.33e-59; confidence=medium |
| GO | GO:0008643 (carbohydrate transport); GO:0016020 (membrane); GO:0051119 (sugar transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF03083 (MtN3_slv) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009076 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057792262.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057792262.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057792262.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792262.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792262.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72407173 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B69 |
Chr2:72407173 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B69 |
Chr2:72411497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C14,C42,C72,C83 |
Chr2:72411507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C40 |
Chr2:72411512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B73 |
Chr2:72412276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,C45 |
Chr2:72412416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:72412441 |
AT |
A |
1bp_deletion | frameshift_variant | 146 | A10,A13,A18,A2,A21,A22,A23,A24,A3,A4,A5,A7,A9,B10,B102,B103,B104,B105,B106,B107,B108,B109,B110,B113,B114,B115,B117,B12,B124,B125,B126,B128,B129,B13,B131,B133,B134,B136,B137,B14,B140,B16,B17,B18,B2,B20,B22,B24,B26,B27,B28,B29,B3,B32,B34,B36,B37,B4,B40,B44,B45,B46,B47,B50,B51,B53,B58,B59,B6,B63,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B76,B77,B84,B88,B9,B91,B92,B93,B94,B95,B98,C1,C11,C12,C14,C15,C16,C17,C19,C2,C22,C24,C25,C29,C31,C33,C34,C35,C36,C39,C40,C41,C42,C44,C45,C48,C5,C50,C55,C57,C60,C61,C62,C64,C66,C67,C69,C71,C72,C73,C74,C78,C81,C83,C86,C9,D1,D10,D11,D2,D3,D4,D6,D7,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792262.1PF03083
MtN3_slv 7-91 aa
PF03083
MtN3_slv 129-212 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792262.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 7 | 91 | 7.1e-51 | 170.9 | Sugar efflux transporter for intercellular exchange |
XP_057792262.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 129 | 212 | 7.1e-51 | 170.9 | Sugar efflux transporter for intercellular exchange |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。