当前解析结果
SmilChr02G005083| 统一新 Gene ID | SmilChr02G005083 |
|---|---|
| 名称 | SmilChr02G005083 |
| 描述 | xyloglucan endotransglucosylase protein 7-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72458887 - 72460404 / + |
| NCBI Gene ID | LOC131009080 |
|---|---|
| GeneID | 131009080 |
| locus_tag | - |
| NCBI Name | LOC131009080 |
| 原始查询 | SmilChr02G005083 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | xyloglucan endotransglucosylase protein 7-like |
| 产物 | xyloglucan endotransglucosylase protein 7-like |
| Arabidopsis | AT3G23730 (XTH16)xyloglucan endotransglucosylase/hydrolase 16 [Source:NCBI gene (formerly Entrezgene);Acc:821955] identity=55.1; qcov=1.01; evalue=8.71e-124; confidence=high |
| Rice | Os06g0696600 (OsXTH12)- identity=62.5; qcov=0.972; evalue=4.03e-128; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast) |
| KEGG | - |
| Pfam | PF00722 (Glyco_hydro_16); PF06955 (XET_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009080 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057792268.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057792268.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792268.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792268.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792268.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72459151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72459158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:72459184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:72459199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr2:72459215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B45,B98,D11,D3 |
Chr2:72459234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72459238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr2:72459269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C23 |
Chr2:72459332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B26,C49 |
Chr2:72459529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C14,C64,C66 |
Chr2:72459562 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B82 |
Chr2:72459562 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792268.1PF00722
Glyco_hydro_16 30-210 aa
PF06955
XET_C 241-283 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792268.1 |
Pfam | PF00722 |
Glyco_hydro_16 | Domain | 30 | 210 | 8.7e-64 | 214.9 | Glycosyl hydrolases family 16 |
XP_057792268.1 |
Pfam | PF06955 |
XET_C | Family | 241 | 283 | 4.2e-17 | 62.4 | Xyloglucan endo-transglycosylase (XET) C-terminus |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。