Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005090`

染色体: Chr02 坐标: 72493408-72500890 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005090`
名称	SmilChr02G005090
描述	serine/threonine-protein phosphatase 5
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72493408 - 72500890 / `+`

ID 对照

NCBI Gene ID	`LOC131009087`
GeneID	`131009087`
locus_tag	`-`
NCBI Name	`LOC131009087`
原始查询	`SmilChr02G005090`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase 5
产物	serine/threonine-protein phosphatase 5
Arabidopsis	`AT2G42810` (PP5.2) protein phosphatase 5.2 [Source:NCBI gene (formerly Entrezgene);Acc:818881] identity=87.2; qcov=0.994; evalue=0; confidence=high
Rice	`Os05g0204900` (OsPP74) - identity=82.2; qcov=0.99; evalue=0; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005829 (cytosol)
KEGG	-
Pfam	PF00149 (Metallophos); PF00515 (TPR_1); PF07719 (TPR_2); PF08321 (PPP5); PF13181 (TPR_8); PF13431 (TPR_17)
InterPro	-
eggNOG	-
NR	GeneID:131009087

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792274.1`
2	Cytoplasm	细胞质	1.00000	`XP_057792275.1`
3	Nucleus	细胞核	0.80000	`XP_057792275.1`
4	Nucleoplasm	核质	0.40000	`XP_057792275.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057792274.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72493762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,B124
`Chr2:72494009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B78,B81,B83,C59
`Chr2:72494080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,D3
`Chr2:72495260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,B98,C40
`Chr2:72495304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B48,C4,C75,C77,D3
`Chr2:72497450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:72498021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:72498096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B66,C42,C58,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792274.1

555 aa

278

555

TPR_8

TPR_17

TPR_1

TPR_2

TPR_8

PPP5

Metallophos

PF13181 TPR_8 52-83 aa PF13431 TPR_17 75-104 aa PF00515 TPR_1 85-117 aa PF07719 TPR_2 85-117 aa PF13181 TPR_8 86-117 aa PF08321 PPP5 219-285 aa PF00149 Metallophos 293-487 aa

XP_057792275.1

487 aa

244

487

TPR_8

TPR_17

TPR_1

TPR_2

TPR_8

PPP5

Metallophos

PF13181 TPR_8 52-83 aa PF13431 TPR_17 75-104 aa PF00515 TPR_1 85-117 aa PF07719 TPR_2 85-117 aa PF13181 TPR_8 86-117 aa PF08321 PPP5 124-217 aa PF00149 Metallophos 225-419 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792274.1`	Pfam	`PF13181`	TPR_8	Repeat	52	83	7.1e-10	39.0	Tetratricopeptide repeat
`XP_057792274.1`	Pfam	`PF13431`	TPR_17	Repeat	75	104	3.7e-10	39.9	Tetratricopeptide repeat
`XP_057792274.1`	Pfam	`PF00515`	TPR_1	Repeat	85	117	7.9e-22	76.8	Tetratricopeptide repeat
`XP_057792274.1`	Pfam	`PF07719`	TPR_2	Repeat	85	117	1.5e-17	62.9	Tetratricopeptide repeat
`XP_057792274.1`	Pfam	`PF13181`	TPR_8	Repeat	86	117	7.1e-10	39.0	Tetratricopeptide repeat
`XP_057792274.1`	Pfam	`PF08321`	PPP5	Repeat	219	285	1.8e-25	89.6	PPP5 TPR repeat region
`XP_057792274.1`	Pfam	`PF00149`	Metallophos	Domain	293	487	1.3e-37	130.9	Calcineurin-like phosphoesterase
`XP_057792275.1`	Pfam	`PF13181`	TPR_8	Repeat	52	83	4.5e-10	39.6	Tetratricopeptide repeat
`XP_057792275.1`	Pfam	`PF13431`	TPR_17	Repeat	75	104	2.6e-10	40.4	Tetratricopeptide repeat
`XP_057792275.1`	Pfam	`PF00515`	TPR_1	Repeat	85	117	4.7e-22	77.6	Tetratricopeptide repeat
`XP_057792275.1`	Pfam	`PF07719`	TPR_2	Repeat	85	117	9.2e-18	63.5	Tetratricopeptide repeat
`XP_057792275.1`	Pfam	`PF13181`	TPR_8	Repeat	86	117	4.5e-10	39.6	Tetratricopeptide repeat
`XP_057792275.1`	Pfam	`PF08321`	PPP5	Repeat	124	217	6.7e-30	103.9	PPP5 TPR repeat region
`XP_057792275.1`	Pfam	`PF00149`	Metallophos	Domain	225	419	9.4e-38	131.3	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936292.1
GGGGGGTATTAGGCTATTTTTTATTTAATATTTAATATTTAATATTTAATATTTAATATTTAATTTATAATTATAATTTGACACTCAACAGTAAACTACTACTCCCGGAATCGTCTAGGGCAGAGACCTGCTTTCCCCTCTTCCTCTCCTTCGTCGTCTTCCATCCCTCCCCTCTTTCACACACACACACACACACACACCGCACACACTGAAAGCTCTCCGGTAATACAAAATCTACTTTCCACAAACAGCAAACAAGA...

XM_057936291.1
TTAATTTATAATTATAATTTGACACTCAACAGTAAACTACTACTCCCGGAATCGTCTAGGGCAGAGACCTGCTTTCCCCTCTTCCTCTCCTTCGTCGTCTTCCATCCCTCCCCTCTTTCACACACACACACACACACACACCGCACACACTGAAAGCTCTCCGGTAATACAAAATCTACTTTCCACAAACAGCAAACAAGACCAATCATTGCAACTCGCTAATTTACTTTATTATGCCCCCTAGCATGGCGACTGAAAAT...

CDS

2 records

下载 CDS FASTA

LOC131009087
ATGCCCCCTAGCATGGCGACTGAAAATTCCACAAACACTTCACGAGCTGAGGAACTCAAAGTCCAAGCGAATGAAGCCTTCAAAGCGCATAAATACTCCCAAGCGATTGATTTGTATACGCAAGCGATAGAGTTGAATAATGATAATGCGGTTTACTGGGCTAACCGTGCGTTTGCGCACACTAAGTTGGAGGAGTATGGGAGTGCTATACAGGATGCTACATCTGCTATCGAGATCGATCCGAAGTATTCCAAGGGATA...

Protein

2 records

下载 Protein FASTA

XP_057792274.1
MPPSMATENSTNTSRAEELKVQANEAFKAHKYSQAIDLYTQAIELNNDNAVYWANRAFAHTKLEEYGSAIQDATSAIEIDPKYSKGYYRRGAAYLAMGKFKEALKDFQQVKRLCPNDPDATKKLKECEKAVMKLKFEEAISVPESERRSVADSIDYHTIGTSPGSSYVSLKVTAVAAAVALLAVYVATKAAIAVATTAMAIVLVVLGTCWQGRCKDSVFTKGRTLDLEVESQYAGARIEGDVVTLDFVKKMLDDFKNQKC...

XP_057792275.1
MPPSMATENSTNTSRAEELKVQANEAFKAHKYSQAIDLYTQAIELNNDNAVYWANRAFAHTKLEEYGSAIQDATSAIEIDPKYSKGYYRRGAAYLAMGKFKEALKDFQQVKRLCPNDPDATKKLKECEKAVMKLKFEEAISVPESERRSVADSIDYHTIEVESQYAGARIEGDVVTLDFVKKMLDDFKNQKCLHKRYACQIVLQIRDLLRELPSLVDIHVPDGKHFTVCGDVHGQFYDLINIFELNGLPSEDNPYLFNGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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