Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005093`

染色体: Chr02 坐标: 72511257-72514739 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005093`
名称	SmilChr02G005093
描述	ubiquinone biosynthesis O-methyltransferase, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72511257 - 72514739 / `+`

ID 对照

NCBI Gene ID	`LOC131009089`
GeneID	`131009089`
locus_tag	`-`
NCBI Name	`LOC131009089`
原始查询	`SmilChr02G005093`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquinone biosynthesis O-methyltransferase, mitochondrial
产物	ubiquinone biosynthesis O-methyltransferase%2C mitochondrial
Arabidopsis	`AT2G30920` (COQ3) coenzyme Q 3 [Source:NCBI gene (formerly Entrezgene);Acc:817642] identity=66.9; qcov=0.818; evalue=6.35e-120; confidence=high
Rice	`Os06g0152300` (COQ3) - identity=66.3; qcov=0.861; evalue=8.94e-120; confidence=high
GO	GO:0006744 (ubiquinone biosynthetic process); GO:0008425 (2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01209 (Ubie_methyltran); PF02353 (CMAS); PF06325 (PrmA); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131009089

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792277.1`
2	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057792277.1`
3	Mitochondrion membrane	线粒体膜	0.20000	`XP_057792279.1`
4	Nucleus	细胞核	0.00000	`XP_057792277.1`
5	Chromosome	染色体	0.00000	`XP_057792277.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72511379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:72511408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:72511420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:72511499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B47,B98,C10,C47,C81
`Chr2:72511515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B16,B25,B47
`Chr2:72511543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B16
`Chr2:72511768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,B16,B25,B47
`Chr2:72511781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C54,C74
`Chr2:72511795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:72512026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:72512349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr2:72512912`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792277.1

330 aa

165

330

Methyltransf_23

Methyltransf_25

Methyltransf_11

PF13489 Methyltransf_23 121-292 aa PF13649 Methyltransf_25 127-166 aa PF08241 Methyltransf_11 127-179 aa

XP_057792278.1

330 aa

165

330

Methyltransf_23

Methyltransf_25

Methyltransf_11

PF13489 Methyltransf_23 121-292 aa PF13649 Methyltransf_25 127-166 aa PF08241 Methyltransf_11 127-179 aa

XP_057792279.1

309 aa

154

309

Ubie_methyltran

Methyltransf_23

CMAS

Methyltransf_31

PrmA

Methyltransf_12

Methyltransf_25

Methyltransf_11

PF01209 Ubie_methyltran 116-224 aa PF13489 Methyltransf_23 121-271 aa PF02353 CMAS 122-235 aa PF13847 Methyltransf_31 122-257 aa PF06325 PrmA 125-227 aa PF08242 Methyltransf_12 127-220 aa PF13649 Methyltransf_25 127-220 aa PF08241 Methyltransf_11 127-223 aa

XP_057792280.1

309 aa

154

309

Ubie_methyltran

Methyltransf_23

CMAS

Methyltransf_31

PrmA

Methyltransf_12

Methyltransf_25

Methyltransf_11

XP_057792281.1

303 aa

152

303

Methyltransf_23

Methyltransf_31

Methyltransf_12

Methyltransf_25

Methyltransf_11

PF13489 Methyltransf_23 121-265 aa PF13847 Methyltransf_31 122-251 aa PF08242 Methyltransf_12 127-214 aa PF13649 Methyltransf_25 127-214 aa PF08241 Methyltransf_11 127-217 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792277.1`	Pfam	`PF13489`	Methyltransf_23	Domain	121	292	2.4e-17	63.8	Methyltransferase domain
`XP_057792277.1`	Pfam	`PF13649`	Methyltransf_25	Domain	127	166	4.1e-07	31.3	Methyltransferase domain
`XP_057792277.1`	Pfam	`PF08241`	Methyltransf_11	Domain	127	179	1.1e-10	42.7	Methyltransferase domain
`XP_057792278.1`	Pfam	`PF13489`	Methyltransf_23	Domain	121	292	2.4e-17	63.8	Methyltransferase domain
`XP_057792278.1`	Pfam	`PF13649`	Methyltransf_25	Domain	127	166	4.1e-07	31.3	Methyltransferase domain
`XP_057792278.1`	Pfam	`PF08241`	Methyltransf_11	Domain	127	179	1.1e-10	42.7	Methyltransferase domain
`XP_057792279.1`	Pfam	`PF01209`	Ubie_methyltran	Family	116	224	1.8e-05	25.0	ubiE/COQ5 methyltransferase family
`XP_057792279.1`	Pfam	`PF13489`	Methyltransf_23	Domain	121	271	1.2e-18	68.0	Methyltransferase domain
`XP_057792279.1`	Pfam	`PF02353`	CMAS	Family	122	235	1.9e-07	31.4	Mycolic acid cyclopropane synthetase
`XP_057792279.1`	Pfam	`PF13847`	Methyltransf_31	Domain	122	257	7.6e-13	49.2	Methyltransferase domain
`XP_057792279.1`	Pfam	`PF06325`	PrmA	Family	125	227	4.8e-06	27.0	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057792279.1`	Pfam	`PF08242`	Methyltransf_12	Domain	127	220	3.6e-12	47.6	Methyltransferase domain
`XP_057792279.1`	Pfam	`PF13649`	Methyltransf_25	Domain	127	220	1.6e-14	55.1	Methyltransferase domain
`XP_057792279.1`	Pfam	`PF08241`	Methyltransf_11	Domain	127	223	1.4e-18	68.0	Methyltransferase domain
`XP_057792280.1`	Pfam	`PF01209`	Ubie_methyltran	Family	116	224	1.8e-05	25.0	ubiE/COQ5 methyltransferase family
`XP_057792280.1`	Pfam	`PF13489`	Methyltransf_23	Domain	121	271	1.2e-18	68.0	Methyltransferase domain
`XP_057792280.1`	Pfam	`PF02353`	CMAS	Family	122	235	1.9e-07	31.4	Mycolic acid cyclopropane synthetase
`XP_057792280.1`	Pfam	`PF13847`	Methyltransf_31	Domain	122	257	7.6e-13	49.2	Methyltransferase domain
`XP_057792280.1`	Pfam	`PF06325`	PrmA	Family	125	227	4.8e-06	27.0	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057792280.1`	Pfam	`PF08242`	Methyltransf_12	Domain	127	220	3.6e-12	47.6	Methyltransferase domain
`XP_057792280.1`	Pfam	`PF13649`	Methyltransf_25	Domain	127	220	1.6e-14	55.1	Methyltransferase domain
`XP_057792280.1`	Pfam	`PF08241`	Methyltransf_11	Domain	127	223	1.4e-18	68.0	Methyltransferase domain
`XP_057792281.1`	Pfam	`PF13489`	Methyltransf_23	Domain	121	265	1.5e-18	67.8	Methyltransferase domain
`XP_057792281.1`	Pfam	`PF13847`	Methyltransf_31	Domain	122	251	6.5e-09	36.4	Methyltransferase domain
`XP_057792281.1`	Pfam	`PF08242`	Methyltransf_12	Domain	127	214	4.1e-08	34.6	Methyltransferase domain
`XP_057792281.1`	Pfam	`PF13649`	Methyltransf_25	Domain	127	214	6.1e-08	34.0	Methyltransferase domain
`XP_057792281.1`	Pfam	`PF08241`	Methyltransf_11	Domain	127	217	3e-11	44.5	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057936295.1
GTGGCCCGGCCCATTATCTCTCTCCTTTCCCACAGTGACGCTGCGGTGCTCGAGAAAGCCTCCGGCATCTTCTTTCATTTGCGACGATGATGTCTAAGCATATTCTAGCCCGACTCCGACCCCTAACCCGGCCCGCTTGTCGTAGTTCACAGCCCGCGAACTACACGACCCATGAATTTCATCATAAGCTCCAAAGTCGGCGTTACTCGGATTCTCCGCTTCCATCTCCGGCCGCTCCGGCTCCTACTCCTCCACCGTCG...

XM_057936297.1
GTGGCCCGGCCCATTATCTCTCTCCTTTCCCACAGTGACGCTGCGGTGCTCGAGAAAGCCTCCGGCATCTTCTTTCATTTGCGACGATGATGTCTAAGCATATTCTAGCCCGACTCCGACCCCTAACCCGGCCCGCTTGTCGTAGTTCACAGCCCGCGAACTACACGACCCATGAATTTCATCATAAGCTCCAAAGTCGGCGTTACTCGGATTCTCCGCTTCCATCTCCGGCCGCTCCGGCTCCTACTCCTCCACCGTCG...

CDS

5 records

下载 CDS FASTA

LOC131009089
ATGATGTCTAAGCATATTCTAGCCCGACTCCGACCCCTAACCCGGCCCGCTTGTCGTAGTTCACAGCCCGCGAACTACACGACCCATGAATTTCATCATAAGCTCCAAAGTCGGCGTTACTCGGATTCTCCGCTTCCATCTCCGGCCGCTCCGGCTCCTACTCCTCCACCGTCGGCTAAGATATATTCAAAAAGCTCTTTGAATGAAGCTGAGCTGAAGAAGTTCGCCGCCATTTCTGAGACATGGTGGGATGCTGAAGG...

Protein

5 records

下载 Protein FASTA

XP_057792277.1
MMSKHILARLRPLTRPACRSSQPANYTTHEFHHKLQSRRYSDSPLPSPAAPAPTPPPSAKIYSKSSLNEAELKKFAAISETWWDAEGPFKPLHVMNPTRLAFIRSMLCRHFGKDPSCSRPFEGLKFVDVGCGGGILSEPLARMGAHVTGVDAVEKNIKIAQLHADLDPTTSSIDYLCTTAGICRTYVFTVKKNWWKSRGNLMLYLHLRCTPDCLHAIQVIEHVADPADFCKSLSALTESGGATLISTINRSMRAYATAIV...

XP_057792278.1
MMSKHILARLRPLTRPACRSSQPANYTTHEFHHKLQSRRYSDSPLPSPAAPAPTPPPSAKIYSKSSLNEAELKKFAAISETWWDAEGPFKPLHVMNPTRLAFIRSMLCRHFGKDPSCSRPFEGLKFVDVGCGGGILSEPLARMGAHVTGVDAVEKNIKIAQLHADLDPTTSSIDYLCTTAGICRTYVFTVKKNWWKSRGNLMLYLHLRCTPDCLHAIQVIEHVADPADFCKSLSALTESGGATLISTINRSMRAYATAIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器