Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005099`

染色体: Chr02 坐标: 72543497-72547919 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005099`
名称	SmilChr02G005099
描述	pentatricopeptide repeat-containing protein At4g33990-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72543497 - 72547919 / `-`

ID 对照

NCBI Gene ID	`LOC131009094`
GeneID	`131009094`
locus_tag	`-`
NCBI Name	`LOC131009094`
原始查询	`SmilChr02G005099`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g33990-like
产物	pentatricopeptide repeat-containing protein At4g33990-like
Arabidopsis	`AT4G33990` (EMB2758) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829546] identity=52; qcov=1.07; evalue=0; confidence=high
Rice	`Os03g0396200` - identity=47.6; qcov=0.806; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131009094

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792287.1`
2	Nucleus	细胞核	0.00000	`XP_057792287.1`
3	Chromosome	染色体	0.00000	`XP_057792287.1`
4	Centromere	着丝粒	0.00000	`XP_057792287.1`
5	Chromatin	染色质	0.00000	`XP_057792287.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72544924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B4,B9,C15,C53
`Chr2:72544928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,B55,C23,C62
`Chr2:72544967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B47,C83
`Chr2:72544994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B20,B41,B73,C47
`Chr2:72545000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B78,B81,B83,C59
`Chr2:72545020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B4,B9,C15,C53
`Chr2:72545023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B47,C34,C83,D6
`Chr2:72545026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B70,C15,C45
`Chr2:72545078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B112,B62,B64
`Chr2:72545141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:72545234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B26,B70,B72
`Chr2:72545314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792287.1

828 aa

414

828

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

DYW_deaminase

PF13041 PPR_2 117-164 aa PF01535 PPR 119-147 aa PF01535 PPR 191-215 aa PF13041 PPR_2 216-263 aa PF01535 PPR 219-248 aa PF01535 PPR 291-314 aa PF13041 PPR_2 316-359 aa PF01535 PPR 319-347 aa PF01535 PPR 393-419 aa PF13812 PPR_3 418-466 aa PF13041 PPR_2 418-467 aa PF01535 PPR 421-449 aa PF01535 PPR 495-516 aa PF13041 PPR_2 522-568 aa PF01535 PPR 524-553 aa PF13812 PPR_3 545-604 aa PF01535 PPR 558-585 aa PF01535 PPR 596-620 aa PF20431 E_motif 638-700 aa PF14432 DYW_deaminase 736-828 aa

XP_057792288.1

828 aa

414

828

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

DYW_deaminase

XP_057792289.1

819 aa

410

819

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

DYW_deaminase

PF13041 PPR_2 108-155 aa PF01535 PPR 110-138 aa PF01535 PPR 182-206 aa PF13041 PPR_2 207-254 aa PF01535 PPR 210-239 aa PF01535 PPR 282-305 aa PF13041 PPR_2 307-350 aa PF01535 PPR 310-338 aa PF01535 PPR 384-410 aa PF13812 PPR_3 409-457 aa PF13041 PPR_2 409-458 aa PF01535 PPR 412-440 aa PF01535 PPR 486-507 aa PF13041 PPR_2 513-559 aa PF01535 PPR 515-544 aa PF13812 PPR_3 536-595 aa PF01535 PPR 549-576 aa PF01535 PPR 587-611 aa PF20431 E_motif 629-691 aa PF14432 DYW_deaminase 727-819 aa

XP_057792290.1

763 aa

382

763

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

DYW_deaminase

PF13041 PPR_2 108-155 aa PF01535 PPR 110-138 aa PF01535 PPR 182-206 aa PF13041 PPR_2 207-254 aa PF01535 PPR 210-239 aa PF01535 PPR 257-282 aa PF01535 PPR 328-354 aa PF13812 PPR_3 353-401 aa PF13041 PPR_2 353-402 aa PF01535 PPR 356-384 aa PF01535 PPR 430-451 aa PF13041 PPR_2 457-503 aa PF01535 PPR 459-488 aa PF13812 PPR_3 480-539 aa PF01535 PPR 493-520 aa PF01535 PPR 531-555 aa PF20431 E_motif 573-635 aa PF14432 DYW_deaminase 671-763 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792287.1`	Pfam	`PF13041`	PPR_2	Repeat	117	164	2.8e-66	220.1	PPR repeat family
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	119	147	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	191	215	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF13041`	PPR_2	Repeat	216	263	2.8e-66	220.1	PPR repeat family
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	219	248	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	291	314	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF13041`	PPR_2	Repeat	316	359	2.8e-66	220.1	PPR repeat family
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	319	347	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	393	419	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF13812`	PPR_3	Repeat	418	466	4.3e-28	97.9	Pentatricopeptide repeat domain
`XP_057792287.1`	Pfam	`PF13041`	PPR_2	Repeat	418	467	2.8e-66	220.1	PPR repeat family
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	421	449	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	495	516	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF13041`	PPR_2	Repeat	522	568	2.8e-66	220.1	PPR repeat family
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	524	553	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF13812`	PPR_3	Repeat	545	604	4.3e-28	97.9	Pentatricopeptide repeat domain
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	558	585	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF01535`	PPR	Repeat	596	620	6.7e-69	224.2	PPR repeat
`XP_057792287.1`	Pfam	`PF20431`	E_motif	Repeat	638	700	2.8e-19	69.9	E motif
`XP_057792287.1`	Pfam	`PF14432`	DYW_deaminase	Domain	736	828	1.9e-45	153.3	DYW family of nucleic acid deaminases
`XP_057792288.1`	Pfam	`PF13041`	PPR_2	Repeat	117	164	2.8e-66	220.1	PPR repeat family
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	119	147	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	191	215	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF13041`	PPR_2	Repeat	216	263	2.8e-66	220.1	PPR repeat family
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	219	248	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	291	314	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF13041`	PPR_2	Repeat	316	359	2.8e-66	220.1	PPR repeat family
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	319	347	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	393	419	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF13812`	PPR_3	Repeat	418	466	4.3e-28	97.9	Pentatricopeptide repeat domain
`XP_057792288.1`	Pfam	`PF13041`	PPR_2	Repeat	418	467	2.8e-66	220.1	PPR repeat family
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	421	449	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	495	516	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF13041`	PPR_2	Repeat	522	568	2.8e-66	220.1	PPR repeat family
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	524	553	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF13812`	PPR_3	Repeat	545	604	4.3e-28	97.9	Pentatricopeptide repeat domain
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	558	585	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF01535`	PPR	Repeat	596	620	6.7e-69	224.2	PPR repeat
`XP_057792288.1`	Pfam	`PF20431`	E_motif	Repeat	638	700	2.8e-19	69.9	E motif
`XP_057792288.1`	Pfam	`PF14432`	DYW_deaminase	Domain	736	828	1.9e-45	153.3	DYW family of nucleic acid deaminases
`XP_057792289.1`	Pfam	`PF13041`	PPR_2	Repeat	108	155	2.5e-66	220.3	PPR repeat family
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	110	138	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	182	206	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF13041`	PPR_2	Repeat	207	254	2.5e-66	220.3	PPR repeat family
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	210	239	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	282	305	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF13041`	PPR_2	Repeat	307	350	2.5e-66	220.3	PPR repeat family
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	310	338	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	384	410	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF13812`	PPR_3	Repeat	409	457	3.9e-28	98.0	Pentatricopeptide repeat domain
`XP_057792289.1`	Pfam	`PF13041`	PPR_2	Repeat	409	458	2.5e-66	220.3	PPR repeat family
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	412	440	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	486	507	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF13041`	PPR_2	Repeat	513	559	2.5e-66	220.3	PPR repeat family
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	515	544	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF13812`	PPR_3	Repeat	536	595	3.9e-28	98.0	Pentatricopeptide repeat domain
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	549	576	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF01535`	PPR	Repeat	587	611	5.6e-69	224.4	PPR repeat
`XP_057792289.1`	Pfam	`PF20431`	E_motif	Repeat	629	691	2.6e-19	69.9	E motif
`XP_057792289.1`	Pfam	`PF14432`	DYW_deaminase	Domain	727	819	1.9e-45	153.3	DYW family of nucleic acid deaminases
`XP_057792290.1`	Pfam	`PF13041`	PPR_2	Repeat	108	155	1.9e-60	201.5	PPR repeat family
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	110	138	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	182	206	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF13041`	PPR_2	Repeat	207	254	1.9e-60	201.5	PPR repeat family
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	210	239	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	257	282	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	328	354	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF13812`	PPR_3	Repeat	353	401	2.3e-25	89.2	Pentatricopeptide repeat domain
`XP_057792290.1`	Pfam	`PF13041`	PPR_2	Repeat	353	402	1.9e-60	201.5	PPR repeat family
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	356	384	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	430	451	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF13041`	PPR_2	Repeat	457	503	1.9e-60	201.5	PPR repeat family
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	459	488	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF13812`	PPR_3	Repeat	480	539	2.3e-25	89.2	Pentatricopeptide repeat domain
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	493	520	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF01535`	PPR	Repeat	531	555	1.7e-62	204.1	PPR repeat
`XP_057792290.1`	Pfam	`PF20431`	E_motif	Repeat	573	635	3.8e-19	69.4	E motif
`XP_057792290.1`	Pfam	`PF14432`	DYW_deaminase	Domain	671	763	1.7e-45	153.5	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057936307.1
TAAACCCTAACAAATGGTTTCTCATCGCAGGATTGCTATTTTGCGGGGCATTTAATCTTAAATGAATGTTGAGACTGCTACCCGTCTGTAAGGATGGGATTTCCTTAGAATATCTGTCAAGATCAAGTTGTTACCTCTTACGTTGTTACGGTGTGAGCTGCACCGGCAATTTGTCTAATGGCAATGATGAAAGAAACAGAGAGATTGATGTTGAGGGGCTATTTAGAGCTTGCACAAAATCTGAGGACGTCAAGTGCCTT...

XM_057936306.1
TAAACCCTAACAAATGGTTTCTCATCGCAGGATTGCTATTTTGCGGGGCATTTAATCTTAAATGAATGTTGAGACTGCTACCCGTCTGTAAGGATGGGATTTCCTTAGAATATCTGTCAAGATCAAGTTGTTACCTCTTACGTTGTTACGGTGTGAGCTGCACCGGCAATTTGTCTAATGGCAATGATGAAAGAAACAGAGAGATTGATGTTGAGGGGCTATTTAGAGCTTGCACAAAATCTGAGGACGTCAAGTGCCTT...

CDS

4 records

下载 CDS FASTA

LOC131009094
ATGTTGAGACTGCTACCCGTCTGTAAGGATGGGATTTCCTTAGAATATCTGTCAAGATCAAGTTGTTACCTCTTACGTTGTTACGGTGTGAGCTGCACCGGCAATTTGTCTAATGGCAATGATGAAAGAAACAGAGAGATTGATGTTGAGGGGCTATTTAGAGCTTGCACAAAATCTGAGGACGTCAAGTGCCTTCATGCTCTTCTTACTATATCAGGGAAAGCTAAAAGCTCTTTTGTCGCCACCAGGCTTATCAATAT...

Protein

4 records

下载 Protein FASTA

XP_057792287.1
MCIILIIYFVCRLLPVCKDGISLEYLSRSSCYLLRCYGVSCTGNLSNGNDERNREIDVEGLFRACTKSEDVKCLHALLTISGKAKSSFVATRLINMYSYFGNVSLSRDTFEQVRDKDSYTWNSMISAYVRNRQSNKAVKCVSEMLSRTDVRPDFHTFPPVLKACSALPDGASLHCRILKSGFEWDVFVAASLVHMYCRFGFADRAYTIFKDMPSRDTGCWNSMISGYFQNGNAKEALSILDDMILEGVKMDSMTVATILS...

XP_057792288.1
MCIILIIYFVCRLLPVCKDGISLEYLSRSSCYLLRCYGVSCTGNLSNGNDERNREIDVEGLFRACTKSEDVKCLHALLTISGKAKSSFVATRLINMYSYFGNVSLSRDTFEQVRDKDSYTWNSMISAYVRNRQSNKAVKCVSEMLSRTDVRPDFHTFPPVLKACSALPDGASLHCRILKSGFEWDVFVAASLVHMYCRFGFADRAYTIFKDMPSRDTGCWNSMISGYFQNGNAKEALSILDDMILEGVKMDSMTVATILS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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