当前解析结果
SmilChr02G005110| 统一新 Gene ID | SmilChr02G005110 |
|---|---|
| 名称 | SmilChr02G005110 |
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72628655 - 72631643 / - |
| NCBI Gene ID | LOC131009107 |
|---|---|
| GeneID | 131009107 |
| locus_tag | - |
| NCBI Name | LOC131009107 |
| 原始查询 | SmilChr02G005110 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 产物 | putative late blight resistance protein homolog R1B-14 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=27.3; qcov=0.977; evalue=4.95e-67; confidence=low |
| Rice | Os07g0186500- identity=34.2; qcov=0.588; evalue=4.71e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009107 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057792305.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057792305.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792305.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792305.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792305.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72628882 |
C |
CTG |
2bp_insertion | frameshift_variant | 21 | A19,A24,B113,B120,B122,B16,B58,B59,B65,B7,B76,B82,C24,C38,C4,C50,C62,C64,C76,C84,D8 |
Chr2:72628886 |
CCG |
C |
2bp_deletion | frameshift_variant | 22 | A19,A24,B113,B120,B122,B16,B58,B59,B65,B7,B76,B82,C24,C38,C4,C50,C62,C64,C76,C84,D10,D8 |
Chr2:72628912 |
G |
GT |
1bp_insertion | frameshift_variant | 26 | A19,A24,B101,B109,B113,B120,B122,B136,B58,B59,B65,B7,B76,B77,B82,C19,C24,C38,C4,C50,C62,C64,C76,C84,D10,D8 |
Chr2:72628913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr2:72628915 |
TC |
T |
1bp_deletion | frameshift_variant | 15 | A21,B103,B109,B114,B133,B30,B51,B90,B97,C39,C48,C5,C61,C63,C67 |
Chr2:72628924 |
A |
AG |
1bp_insertion | frameshift_variant | 25 | A19,A24,B101,B109,B120,B122,B136,B58,B59,B65,B7,B76,B77,B82,C19,C24,C38,C4,C50,C62,C64,C76,C84,D10,D8 |
Chr2:72629067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr2:72629075 |
C |
CCT |
2bp_insertion | frameshift_variant | 51 | A2,A7,A9,B103,B11,B113,B125,B126,B131,B132,B136,B18,B23,B24,B28,B30,B4,B48,B57,B58,B60,B66,B76,B89,B90,B92,B95,B98,C22,C27,C29,C3,C42,C44,C48,C49,C53,C54,C60,C61,C63,C64,C69,C70,C71,C73,C85,C86,C9,D2,D3 |
Chr2:72629104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C59,C77 |
Chr2:72629110 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B78,C58 |
Chr2:72629156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A2,B104,B24 |
Chr2:72629170 |
CAT |
C |
2bp_deletion | frameshift_variant | 33 | A14,A24,B112,B123,B125,B126,B127,B130,B135,B14,B140,B18,B28,B29,B30,B4,B40,B41,B42,B46,B48,B57,B9,B93,B95,C44,C49,C58,C71,C78,C8,C86,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792305.1PF00931
NB-ARC 148-311 aa
PF23559
WHD_DRP 387-450 aa
PF23598
LRR_14 482-686 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792305.1 |
Pfam | PF00931 |
NB-ARC | Domain | 148 | 311 | 1e-39 | 136.6 | NB-ARC domain |
XP_057792305.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 387 | 450 | 2.6e-14 | 53.7 | Disease resistance protein Winged helix domain |
XP_057792305.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 482 | 686 | 1.1e-17 | 64.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。