Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005112`

染色体: Chr02 坐标: 72633139-72643832 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005112`
名称	SmilChr02G005112
描述	putative late blight resistance protein homolog R1B-14
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72633139 - 72643832 / `-`

ID 对照

NCBI Gene ID	`LOC131009106`
GeneID	`131009106`
locus_tag	`-`
NCBI Name	`LOC131009106`
原始查询	`SmilChr02G005112`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-14
产物	putative late blight resistance protein homolog R1B-14
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=27.6; qcov=0.91; evalue=8.51e-73; confidence=low
Rice	`Os07g0186500` - identity=29.3; qcov=0.936; evalue=4.36e-77; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131009106

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057792303.1`
2	Cytoplasm	细胞质	0.40000	`XP_057792303.1`
3	Cytosol	细胞质基质	0.40000	`XP_057792304.1`
4	Nucleus	细胞核	0.00000	`XP_057792304.1`
5	Chromosome	染色体	0.00000	`XP_057792304.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72633810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr2:72633860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B112,B41,B62,B64
`Chr2:72633863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:72633902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B2,B63,C67,D5
`Chr2:72633908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B2,B63
`Chr2:72633929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:72633939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,B9,B98,C8
`Chr2:72633951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C67,D5
`Chr2:72633960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C29,C40,C8
`Chr2:72634157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C29,C40,C8
`Chr2:72634202`	`AT`	`A`	1bp_deletion	frameshift_variant	35	A14,A15,A24,A25,A7,B102,B107,B109,B110,B117,B12,B121,B123,B125,B131,B137,B140,B18,B23,B36,B39,B51,B60,B66,B71,B90,B99,C24,C25,C30,C38,C5,C66,C78,D10
`Chr2:72634204`	`CAT`	`C`	2bp_deletion	frameshift_variant	35	A14,A15,A24,A25,A7,B102,B107,B109,B110,B117,B12,B121,B123,B125,B131,B137,B140,B18,B23,B36,B39,B51,B60,B66,B71,B90,B99,C24,C25,C30,C38,C5,C66,C78,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792303.1

884 aa

442

884

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 148-312 aa PF23559 WHD_DRP 389-458 aa PF23598 LRR_14 490-696 aa

XP_057792304.1

876 aa

438

876

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 149-312 aa PF23559 WHD_DRP 388-451 aa PF23598 LRR_14 483-686 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792303.1`	Pfam	`PF00931`	NB-ARC	Domain	148	312	5.4e-40	137.5	NB-ARC domain
`XP_057792303.1`	Pfam	`PF23559`	WHD_DRP	Domain	389	458	1.1e-20	74.1	Disease resistance protein Winged helix domain
`XP_057792303.1`	Pfam	`PF23598`	LRR_14	Repeat	490	696	1.1e-19	71.2	Leucine-rich repeat region
`XP_057792304.1`	Pfam	`PF00931`	NB-ARC	Domain	149	312	5.9e-40	137.4	NB-ARC domain
`XP_057792304.1`	Pfam	`PF23559`	WHD_DRP	Domain	388	451	2.7e-16	60.1	Disease resistance protein Winged helix domain
`XP_057792304.1`	Pfam	`PF23598`	LRR_14	Repeat	483	686	1.1e-16	61.3	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009096402.1
CGAATGTGATAGTTCTACTTCACACCACACAACCAACTCTAATTCACATCCACACACCTTATACATTGGAGGTCTCCGTCAACGTTTCTCCCTCCCTCACTCATCTCTCCCTAAACCACCATCGCTTCTCATCTCCCCTTCCTTTGATTCGCTCAAACATGGCCTACGCTGCTCTGTCTTCACTTGCCCAAACAACACACCGAATCCTCAATCACGATCAATACCTCATCTCCCACGATGAAAAACAACAGATCACACTG...

XM_057936320.1
GAATGTGATAGTTCTACTTCACACCACACAACCAACTCTAATTCACATCCACACACCTTATACATTGGAGGTCTCCGTCAACGTTTCTCCCTCCCTCACTCATCTCTCCCTAAACCACCATCGCTTCTCATCTCCCCTTCCTTTGATTCGCTCAAACATGGCCTACGCTGCTCTGTCTTCACTTGCCCAAACAACACACCGAATCCTCAATCACGATCAATACCTCATCTCCCACGATGAAAAACAACAGATCACACTGC...

CDS

2 records

下载 CDS FASTA

LOC131009106
ATGGCCTACGCTGCTCTGTCTTCACTTGCCCAAACAACACACCGAATCCTCAATCACGATCAATACCTCATCTCCCACGATGAAAAACAACAGATCACACTGCTCTGTGAAAAAGTTATTTTCTTGCGAGAAGCTTTGCACAAGTTTCCAATGCAAGCCAGCAGCTTGGAAGCAAGAATCAGACGCTCCGCCAACCAAGCAGAGGATATGATCGAGCATTTCATGTACGACCAAATTCGGGATCAATATAGTTCAACTAC...

LOC131009106
ATGGACTATGCTGCTCTCTCTTCACTAGCCCAAACAATACACCGAATCCTCAATCACGATCAACACCTCATCACCCACAACGAAAAACAACAAATCACACTGCTCCATGAAAAAGTTGTTTTCTTGCGAGAAGCTTTCCACAAGTTTCCAAAGCAAGCCAGCAGATTGGAAACAAGAATCAGGGTCGCCGCCAACGAGGCAGAAGATATGATCGAGCATTTCATGTACGACCAAATTTGGGATCAATATAGTTCGATTAC...

Protein

2 records

下载 Protein FASTA

XP_057792303.1
MAYAALSSLAQTTHRILNHDQYLISHDEKQQITLLCEKVIFLREALHKFPMQASSLEARIRRSANQAEDMIEHFMYDQIRDQYSSTTNNPHHLHHDLEKAMKKINSISREAVNFTAEDSAALGDSTTVRASSSMQLAGGVTVGLDEDLLKIADSLTGGSSSCQIIPIVGMAGIGKTTLAQKVYNHPLITETFKIRAWVTVSQDHKPQNIFSDLLACFKEGGIERHGQSNESMDEKVHKILKGRKYLIVLDDMWSRNAWDV...

XP_057792304.1
MDYAALSSLAQTIHRILNHDQHLITHNEKQQITLLHEKVVFLREAFHKFPKQASRLETRIRVAANEAEDMIEHFMYDQIWDQYSSITNNPHHLHHDLEKAVEEINSISREAADFTTEDSAALADDSPTVRTSSSKQLAGGVTVGLDEDLLKIADSLTGGSSRRQIIPIVGMGGIGKTTLAQKVYHHPLITETFMIRAWVTVSQDYNPQNIFSDLLACFKEGGIERDGQSNESMEEKVHKILKGRKYLIVLDDMWSPNAWD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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