Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005116`

染色体: Chr02 坐标: 72669938-72672026 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005116`
名称	SmilChr02G005116
描述	cytochrome P450 72A225-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72669938 - 72672026 / `+`

ID 对照

NCBI Gene ID	`LOC131009112`
GeneID	`131009112`
locus_tag	`-`
NCBI Name	`LOC131009112`
原始查询	`SmilChr02G005116`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome P450 72A225-like
产物	cytochrome P450 72A225-like
Arabidopsis	`AT3G14690` (CYP72A15) cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=56.4; qcov=1; evalue=0; confidence=high
Rice	`Os01g0627500` (OsCYP72A18) - identity=54.5; qcov=0.991; evalue=2.55e-166; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:131009112

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057792311.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057792312.1`
3	Nucleus	细胞核	0.00000	`XP_057792311.1`
4	Chromosome	染色体	0.00000	`XP_057792311.1`
5	Centromere	着丝粒	0.00000	`XP_057792311.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72670200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr2:72670209`	`A`	`AC`	1bp_insertion	frameshift_variant	1	C31
`Chr2:72670209`	`A`	`AC`	1bp_insertion	CDS_variant	1	C31
`Chr2:72670225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,C34,C79
`Chr2:72670246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B113,B46,B77
`Chr2:72670263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,D4
`Chr2:72670277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:72670519`	`T`	`TAC`	2bp_insertion	frameshift_variant	15	A19,A2,A9,B100,B11,B121,B135,B66,B92,B98,C49,C53,C61,C80,D6
`Chr2:72670600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C82,D11
`Chr2:72670646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr2:72670848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B60,C57
`Chr2:72670857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792311.1

515 aa

258

515

p450

PF00067 p450 90-489 aa

XP_057792312.1

430 aa

215

430

p450

PF00067 p450 7-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792311.1`	Pfam	`PF00067`	p450	Domain	90	489	1.3e-80	272.2	Cytochrome P450
`XP_057792312.1`	Pfam	`PF00067`	p450	Domain	7	404	1.1e-79	269.1	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936328.1
AGTCAAACTAAAAGTCTATTATTACTCTCGGAGCTGAAATTCTTCACTCCACCACGTTCAACGCAGAACCAAAAACTGAGAGAGAGAGAGAGAGAGGGAGATTCATGGAAATATTATACAGCATATTGGCGGTTTTCTGCGCTGTTTTTCTCTCACATAATGCATGGAAATTCTTGAAGAGGGTTTGGTTTGAGCCAAGAAAGGTGGAAAAACGGCTAAGGCAAGAGGGCTTCAGTGGAAACAGCTACAGATTTATCACC...

XM_057936329.1
AAAAGTCTATTATTACTCTCGGAGCTGAAATTCTTCACTCCACCACGTTCAACGCAGAACCAAAAACTGAGAGAGAGAGAGAGAGAGGGAGATTCATGGAAATATTATACAGCATATTGGCGGTTTTCTGCGCTGTTTTTCTCTCACATAATGCATGGAAATTCTTGAAGAGGGTTTGGTTTGAGCCAAGAAAGGTGGAAAAACGGCTAAGGCAAGAGGGCTTCAGTGGAAACAGCTACAGATTTATCACCGGCGACTTC...

CDS

2 records

下载 CDS FASTA

LOC131009112
ATGGAAATATTATACAGCATATTGGCGGTTTTCTGCGCTGTTTTTCTCTCACATAATGCATGGAAATTCTTGAAGAGGGTTTGGTTTGAGCCAAGAAAGGTGGAAAAACGGCTAAGGCAAGAGGGCTTCAGTGGAAACAGCTACAGATTTATCACCGGCGACTTCAAAGAAATAGCCGCCACGGACAAACAAGCTCACTCCAAACCCATCGCATTTTCCAACGATATAGCGCCTCGTGTCATCCCCTTCATTCATCAATC...

LOC131009112
ATGGTGAAATTATATATAGGTGAAAACTGTTTCATATGGTATGGCTCAAAGCCTGCAGTAGTTATCTCGGATCACAAAATGATAAAAGAGATTCTGTCCAAGAATTATGTTTTTCAGAAGACTTCAACTCCACTAGATAAGCTGCTAGCACAAGGCGTGGCAACGTACGAAGCAGATAAATGGGCAAAGCATAGAAGACTACTAAATCCTGCTTTTCATCTAGAGAAATTGAAGCTTATGCTTCCGTCGTTTTACTTGAG...

Protein

2 records

下载 Protein FASTA

XP_057792311.1
MEILYSILAVFCAVFLSHNAWKFLKRVWFEPRKVEKRLRQEGFSGNSYRFITGDFKEIAATDKQAHSKPIAFSNDIAPRVIPFIHQSLLKYGENCFIWYGSKPAVVISDHKMIKEILSKNYVFQKTSTPLDKLLAQGVATYEADKWAKHRRLLNPAFHLEKLKLMLPSFYLSCGDMLSKLDEIIPSEGACEVDVWPHLQALTRDVISRTAFGSNYEEGRKIFELQKEQGVLLLKAFQMLYIPGWRFLPTRTTKRMKEIAM...

XP_057792312.1
MVKLYIGENCFIWYGSKPAVVISDHKMIKEILSKNYVFQKTSTPLDKLLAQGVATYEADKWAKHRRLLNPAFHLEKLKLMLPSFYLSCGDMLSKLDEIIPSEGACEVDVWPHLQALTRDVISRTAFGSNYEEGRKIFELQKEQGVLLLKAFQMLYIPGWRFLPTRTTKRMKEIAMEVDSSILGIINKRMQMIEAGEITESNDLLGILLESNYKEIQKNGEDLGMSLREVIDECKLFYLAGQETTSTLLVWTMILLSKHPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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