当前解析结果
SmilChr02G005117| 统一新 Gene ID | SmilChr02G005117 |
|---|---|
| 名称 | SmilChr02G005117 |
| 描述 | cytochrome P450 CYP72A219-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72672090 - 72675764 / - |
| NCBI Gene ID | LOC131009111 |
|---|---|
| GeneID | 131009111 |
| locus_tag | - |
| NCBI Name | LOC131009111 |
| 原始查询 | SmilChr02G005117 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 CYP72A219-like |
| 产物 | cytochrome P450 CYP72A219-like |
| Arabidopsis | AT3G14690 (CYP72A15)cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=52; qcov=0.99; evalue=0; confidence=high |
| Rice | Os01g0627500 (OsCYP72A18)- identity=53.9; qcov=0.959; evalue=0; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009111 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792310.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057792310.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792310.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792310.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792310.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72672116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,B67 |
Chr2:72672123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:72672129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B17,B37,C1,C12 |
Chr2:72672153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:72672165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr2:72672224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr2:72672242 |
G |
A |
EMS_canonical_SNV | stop_gained | 45 | A10,A4,B105,B106,B114,B127,B128,B132,B136,B139,B22,B27,B3,B32,B36,B48,B5,B56,B58,B63,B67,B82,B83,B84,B91,B96,B97,C13,C17,C26,C28,C29,C30,C37,C40,C41,C49,C52,C55,C63,C75,C76,C9,D4,D9 |
Chr2:72672357 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A25,B115,B17,B37,B85,B88,C1,C12 |
Chr2:72672384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:72672462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C1 |
Chr2:72672477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C1 |
Chr2:72672498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792310.1PF00067
p450 82-499 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792310.1 |
Pfam | PF00067 |
p450 | Domain | 82 | 499 | 2.3e-79 | 268.0 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。