Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005125`

染色体: Chr02 坐标: 72714879-72730812 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005125`
名称	SmilChr02G005125
描述	cytochrome P450 CYP72A219-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72714879 - 72730812 / `+`

ID 对照

NCBI Gene ID	`LOC131009120`
GeneID	`131009120`
locus_tag	`-`
NCBI Name	`LOC131009120`
原始查询	`SmilChr02G005125`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome P450 CYP72A219-like
产物	cytochrome P450 CYP72A219-like
Arabidopsis	`AT3G14690` (CYP72A15) cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=51.6; qcov=1; evalue=0; confidence=high
Rice	`Os01g0627500` (OsCYP72A18) - identity=51.4; qcov=0.958; evalue=0; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:131009120

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057792320.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057792320.1`
3	Nucleus	细胞核	0.00000	`XP_057792320.1`
4	Chromosome	染色体	0.00000	`XP_057792320.1`
5	Centromere	着丝粒	0.00000	`XP_057792320.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72714963`	`G`	`A`	EMS_canonical_SNV	stop_gained	26	A11,A5,A8,B1,B110,B114,B13,B140,B25,B30,B35,B50,B55,B56,B66,B69,B77,B96,C17,C23,C28,C56,C78,C84,C85,C86
`Chr2:72714992`	`GAA`	`G`	2bp_deletion	frameshift_variant	2	B37,B69
`Chr2:72714992`	`GAA`	`G`	2bp_deletion	CDS_variant	2	B37,B69
`Chr2:72714994`	`A`	`ATG`	2bp_insertion	frameshift_variant	40	A3,A5,A8,B1,B103,B110,B114,B119,B126,B13,B131,B140,B24,B25,B30,B35,B4,B5,B50,B55,B56,B61,B63,B66,B67,B73,B77,B88,B9,B96,C14,C17,C23,C28,C56,C78,C84,C85,C86,D10
`Chr2:72715059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,B69
`Chr2:72715115`	`A`	`AG`	1bp_insertion	frameshift_variant	11	B119,B131,B24,B56,B61,B63,B67,B73,B96,C44,C85
`Chr2:72715158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:72715337`	`TCA`	`T`	2bp_deletion	frameshift_variant	115	A1,A11,A13,A16,A18,A20,A25,A5,A7,A8,A9,B100,B101,B103,B104,B105,B106,B107,B108,B11,B112,B113,B114,B117,B120,B122,B127,B128,B13,B132,B133,B135,B14,B140,B16,B17,B19,B20,B21,B25,B27,B29,B30,B32,B34,B35,B37,B38,B45,B46,B47,B48,B49,B55,B56,B6,B75,B76,B81,B83,B85,B86,B88,B89,B9,B91,B93,B97,B99,C1,C10,C11,C12,C16,C18,C20,C22,C23,C24,C25,C26,C28,C31,C35,C36,C37,C39,C40,C49,C5,C51,C52,C53,C55,C56,C57,C60,C64,C65,C66,C67,C69,C7,C70,C71,C74,C76,C78,C8,C83,C84,C87,D4,D6,D7
`Chr2:72715343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:72715383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr2:72715386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,A3,B68,D5
`Chr2:72715397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,B50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792320.1

518 aa

259

518

p450

PF00067 p450 89-494 aa

XP_057792321.1

518 aa

259

518

p450

PF00067 p450 84-494 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792320.1`	Pfam	`PF00067`	p450	Domain	89	494	3.2e-79	267.6	Cytochrome P450
`XP_057792321.1`	Pfam	`PF00067`	p450	Domain	84	494	3e-77	261.1	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936338.1
TAGAATGGAAGTATTTGCATACCAAGTAATAGCTTCTTGTTTAGCAATCGTTTTGCTGAGTTACACATTGAAATTACTGAAATGGGCATATTTGAGGCCAAAGAAGCAGGAAAGAATCTTGAGGGAGCAGGGTTTCAAGGGGAATTCATACAGATTAGTCTATGGCGACTTGAAAGAGATGTCTGAGACCATCCAAGATGCCACTTCCAAACCCATCAATCTTGGCGATGATATCAAGCCAAGAGTCATCGCTTTCGTCT...

XM_057936337.1
GAAAGAAAAGAAAGCAAATTTAGCCTAAGCCACGCATAACATTGTTTATATTTTATCCCAATTAACTGTGCGTGAAGCTCTAGAAAGCAGGGGATGGAGGTGGAGCCCCTGTTTGGTTTATCGTTTTAATTAGTCTTTTTCTTTTTCACAAATGTGCAGCAGAAACTAGGTTTGGAGTAAAGAAAAATGCGAGGGATATACAGCATCGTTGCTGCTTGTTTCGCCATCGCAGTTGTGGTAACATACGCATGGAGATTACT...

CDS

2 records

下载 CDS FASTA

LOC131009120
ATGGAAGTATTTGCATACCAAGTAATAGCTTCTTGTTTAGCAATCGTTTTGCTGAGTTACACATTGAAATTACTGAAATGGGCATATTTGAGGCCAAAGAAGCAGGAAAGAATCTTGAGGGAGCAGGGTTTCAAGGGGAATTCATACAGATTAGTCTATGGCGACTTGAAAGAGATGTCTGAGACCATCCAAGATGCCACTTCCAAACCCATCAATCTTGGCGATGATATCAAGCCAAGAGTCATCGCTTTCGTCTTCAA...

LOC131009120
ATGCGAGGGATATACAGCATCGTTGCTGCTTGTTTCGCCATCGCAGTTGTGGTAACATACGCATGGAGATTACTAAATTGGGCATATTTGAGGCCACAGAGGCTGGAGAAGATCCTGAGGAAGCAGGGGCTGAATGGTAATTCATACAGACCGGTGTCCGGTGACATGAAGGAGATGGTGAAGGCGATGCAAGAAGCCAACTCCAAGCCCATCAATCTCGACGATGATATCAAGCCAAGATTGCAACCTTTTCTTCTCAA...

Protein

2 records

下载 Protein FASTA

XP_057792320.1
MRGIYSIVAACFAIAVVVTYAWRLLNWAYLRPQRLEKILRKQGLNGNSYRPVSGDMKEMVKAMQEANSKPINLDDDIKPRLQPFLLNTIRKHGNECFIWKGPTPVVVITETELIKQVLNKHSVFEKPRVLNPLVRMFSQGIFSHEKDKWSKHRKIINPAFHLDKLKLMVPAFHLSCDEVLKEWEKRVSREGWCEFDVCPYLESITSDAISRTAFGSSYKQGRRVFELQLEQSALIMKAMQSVYIPGSRFLPTKRNRRIKQ...

XP_057792321.1
MEVFAYQVIASCLAIVLLSYTLKLLKWAYLRPKKQERILREQGFKGNSYRLVYGDLKEMSETIQDATSKPINLGDDIKPRVIAFVFKTVQKYGNESFFWTGPQPVIIITEVELIKEVLAKYPVYHKVKESNPLTKLFARGLVNYEEDKWAKHRKIINPAFHLDKLKLMVPAFHLSCDEVLKEWEKRVSREGWCEFDVCPYLESITSDAISRTAFGSSYKQGRRVFELQLEQSALIMKAMQSVYIPGSRFLPTKRNRRIKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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