Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005130`

染色体: Chr02 坐标: 72768501-72771813 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005130`
名称	SmilChr02G005130
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72768501 - 72771813 / `+`

ID 对照

NCBI Gene ID	`LOC131009126`
GeneID	`131009126`
locus_tag	`-`
NCBI Name	`LOC131009126`
原始查询	`SmilChr02G005130`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G07870` (AT3G07870) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819978] identity=28; qcov=0.853; evalue=1.26e-23; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=29.4; qcov=0.786; evalue=8.21e-23; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131009126

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792326.1`
2	Cytoplasm	细胞质	0.80000	`XP_057792326.1`
3	Cytosol	细胞质基质	0.20000	`XP_057792326.1`
4	Chromosome	染色体	0.00000	`XP_057792326.1`
5	Centromere	着丝粒	0.00000	`XP_057792326.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72768999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr2:72769083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:72769119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B13
`Chr2:72769293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C3
`Chr2:72769342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C10
`Chr2:72769727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C32,C35,C55,C68
`Chr2:72769738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:72769848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,D10
`Chr2:72769857`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	B130
`Chr2:72769857`	`TGC`	`T`	2bp_deletion	CDS_variant	1	B130
`Chr2:72769881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C14,C82
`Chr2:72769891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792326.1

402 aa

201

402

F-box-like

F-box

FBA_3

PF12937 F-box-like 7-38 aa PF00646 F-box 7-42 aa PF08268 FBA_3 79-319 aa

XP_057792327.1

402 aa

201

402

F-box-like

F-box

FBA_3

PF12937 F-box-like 7-38 aa PF00646 F-box 7-42 aa PF08268 FBA_3 79-319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792326.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	6.1e-09	36.2	F-box-like
`XP_057792326.1`	Pfam	`PF00646`	F-box	Domain	7	42	3.4e-09	37.0	F-box domain
`XP_057792326.1`	Pfam	`PF08268`	FBA_3	Repeat	79	319	1.2e-24	87.7	F-box associated beta propeller domain
`XP_057792327.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	6.1e-09	36.2	F-box-like
`XP_057792327.1`	Pfam	`PF00646`	F-box	Domain	7	42	3.4e-09	37.0	F-box domain
`XP_057792327.1`	Pfam	`PF08268`	FBA_3	Repeat	79	319	1.2e-24	87.7	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936343.1
ACTCACACACGAATAAGAATCCTTCCACACAAGTAAAACAACACTACACACAACGGATCTCTCTCTCTCTCCAGAATTAGTCATCACTAATAAAACTCATCACCAACTCCGGATTAACAACGCCATTTCCTCATTTACAATTTCTACAGCAGATGTGACTTTTCTTCAGTTTTCCCTCGAAAATTTGAGAACGAGATTATATTATTTATGTGCGTGATCGACCAGCTGAAGTGCAGCAAAAAACATGGCGGATTATTTCT...

XM_057936344.1
ACTCACACACGAATAAGAATCCTTCCACACAAGTAAAACAACACTACACACAACGGATCTCTCTCTCTCTCCAGAATTAGTCATCACTAATAAAACTCATCACCAACTCCGGATTAACAACGCCATTTCCTCATTTACAATTTCTACAGCAGATGTGACTTTTCTTCAGTTTTCCCTCGAAAATTTGAGAACGAGATTATATTATTTATGTGCGTGATCGACCAGCTGAAGTGCAGCAAAAAACATGGCGGATTATTTCT...

CDS

2 records

下载 CDS FASTA

LOC131009126
ATGGCGGATTATTTCTTCGAAGAGATCATAATCAACATACTCCACAGATTGCCGGTGAAGACGCTCCTCCGCTGCACCGCCGTCTGCAAATCATGGCACTCTCTCATCACCAGCCGCGAATTCACCTCATCGCACTTGAAATTCGCCCAAAAGGTAGCTCCCTCACTTCTGCTCCGTCGCTGCATCAAAAGCTCCGAGCGCTATGAATTGTATTCGGACGATGAATCGTTCGCTCGCTTCGCAGCATTTCAATTCCCCTT...

Protein

2 records

下载 Protein FASTA

XP_057792326.1
MADYFFEEIIINILHRLPVKTLLRCTAVCKSWHSLITSREFTSSHLKFAQKVAPSLLLRRCIKSSERYELYSDDESFARFAAFQFPFRSMNSFFTIVGSCNGLLCLSDDRVYFMNTIVLWNPSVKKSVLLPKPNMIYNSHGSFLQYLGFGFDPVGSDYKVVRITYVDLATHPQIEVYKLSSGVWHDMSCLELDSVLCSRARPVYVNGASHWLARYLDLHDVIVSFDMSLEVFSTMMLPALRVSDDELRSRDLAVYMDCLA...

XP_057792327.1
MADYFFEEIIINILHRLPVKTLLRCTAVCKSWHSLITSREFTSSHLKFAQKVAPSLLLRRCIKSSERYELYSDDESFARFAAFQFPFRSMNSFFTIVGSCNGLLCLSDDRVYFMNTIVLWNPSVKKSVLLPKPNMIYNSHGSFLQYLGFGFDPVGSDYKVVRITYVDLATHPQIEVYKLSSGVWHDMSCLELDSVLCSRARPVYVNGASHWLARYLDLHDVIVSFDMSLEVFSTMMLPALRVSDDELRSRDLAVYMDCLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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