当前解析结果
SmilChr02G005132| 统一新 Gene ID | SmilChr02G005132 |
|---|---|
| 名称 | SmilChr02G005132 |
| 描述 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72775052 - 72778639 / + |
| NCBI Gene ID | LOC131009128 |
|---|---|
| GeneID | 131009128 |
| locus_tag | - |
| NCBI Name | LOC131009128 |
| 原始查询 | SmilChr02G005132 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like |
| 产物 | ATP-dependent zinc metalloprotease FTSH 2%2C chloroplastic-like |
| Arabidopsis | AT2G30950 (VAR2)FtsH extracellular protease family [Source:NCBI gene (formerly Entrezgene);Acc:817646] identity=85.4; qcov=0.99; evalue=0; confidence=high |
| Rice | Os06g0669400 (OsFtsH2)- identity=87.5; qcov=0.938; evalue=0; confidence=high |
| GO | GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding); GO:0009534 (chloroplast thylakoid); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF01434 (Peptidase_M41); PF06068 (TIP49); PF06480 (FtsH_ext); PF17862 (AAA_lid_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009128 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057792329.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057792329.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057792329.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057792329.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057792329.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72775995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr2:72776116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72776550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr2:72776574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B127,B48,B61,C18 |
Chr2:72776931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B10,B72,B76 |
Chr2:72777018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B127,B48,B61,C18 |
Chr2:72777197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B30,B79 |
Chr2:72777227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B127,B48,B61,C18 |
Chr2:72777332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C3 |
Chr2:72777855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr2:72778233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:72778252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792329.1PF06480
FtsH_ext 89-163 aa
PF06068
TIP49 266-302 aa
PF00004
AAA 268-400 aa
PF17862
AAA_lid_3 423-466 aa
PF01434
Peptidase_M41 482-671 aa
XP_057792330.1PF06480
FtsH_ext 89-163 aa
PF06068
TIP49 266-302 aa
PF00004
AAA 268-400 aa
PF17862
AAA_lid_3 423-466 aa
PF01434
Peptidase_M41 482-671 aa
XP_057792331.1PF06480
FtsH_ext 89-163 aa
PF06068
TIP49 266-302 aa
PF00004
AAA 268-400 aa
PF17862
AAA_lid_3 423-466 aa
PF01434
Peptidase_M41 482-671 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792329.1 |
Pfam | PF06480 |
FtsH_ext | Family | 89 | 163 | 8.1e-08 | 33.1 | FtsH Extracellular |
XP_057792329.1 |
Pfam | PF06068 |
TIP49 | Domain | 266 | 302 | 1.2e-05 | 25.4 | TIP49 P-loop domain |
XP_057792329.1 |
Pfam | PF00004 |
AAA | Domain | 268 | 400 | 4e-47 | 160.7 | ATPase family associated with various cellular activities (AAA) |
XP_057792329.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 423 | 466 | 5.1e-13 | 49.0 | AAA+ lid domain |
XP_057792329.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 482 | 671 | 6.6e-67 | 225.8 | Peptidase family M41 |
XP_057792330.1 |
Pfam | PF06480 |
FtsH_ext | Family | 89 | 163 | 8.1e-08 | 33.1 | FtsH Extracellular |
XP_057792330.1 |
Pfam | PF06068 |
TIP49 | Domain | 266 | 302 | 1.2e-05 | 25.4 | TIP49 P-loop domain |
XP_057792330.1 |
Pfam | PF00004 |
AAA | Domain | 268 | 400 | 4e-47 | 160.7 | ATPase family associated with various cellular activities (AAA) |
XP_057792330.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 423 | 466 | 5.1e-13 | 49.0 | AAA+ lid domain |
XP_057792330.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 482 | 671 | 6.6e-67 | 225.8 | Peptidase family M41 |
XP_057792331.1 |
Pfam | PF06480 |
FtsH_ext | Family | 89 | 163 | 8.1e-08 | 33.1 | FtsH Extracellular |
XP_057792331.1 |
Pfam | PF06068 |
TIP49 | Domain | 266 | 302 | 1.2e-05 | 25.4 | TIP49 P-loop domain |
XP_057792331.1 |
Pfam | PF00004 |
AAA | Domain | 268 | 400 | 4e-47 | 160.7 | ATPase family associated with various cellular activities (AAA) |
XP_057792331.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 423 | 466 | 5.1e-13 | 49.0 | AAA+ lid domain |
XP_057792331.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 482 | 671 | 6.6e-67 | 225.8 | Peptidase family M41 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。