Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005146`

染色体: Chr02 坐标: 72860905-72864277 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005146`
名称	SmilChr02G005146
描述	cytochrome P450 CYP72A219-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72860905 - 72864277 / `-`

ID 对照

NCBI Gene ID	`LOC131009140`
GeneID	`131009140`
locus_tag	`-`
NCBI Name	`LOC131009140`
原始查询	`SmilChr02G005146`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome P450 CYP72A219-like
产物	cytochrome P450 CYP72A219-like
Arabidopsis	`AT3G14640` (CYP72A10) cytochrome P450, family 72, subfamily A, polypeptide 10 [Source:NCBI gene (formerly Entrezgene);Acc:820692] identity=57.3; qcov=0.975; evalue=3.82e-136; confidence=high
Rice	`Os01g0627500` (OsCYP72A18) - identity=54.7; qcov=0.969; evalue=2.54e-128; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:131009140

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057792342.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057792342.1`
3	Nucleus	细胞核	0.00000	`XP_057792342.1`
4	Chromosome	染色体	0.00000	`XP_057792342.1`
5	Centromere	着丝粒	0.00000	`XP_057792342.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72861061`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C73,C86
`Chr2:72861061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C73,C86
`Chr2:72861177`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C70
`Chr2:72861177`	`TG`	`T`	1bp_deletion	CDS_variant	1	C70
`Chr2:72861224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C3,C78
`Chr2:72861234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B83,C59
`Chr2:72861301`	`G`	`GC`	1bp_insertion	frameshift_variant	6	A7,B29,B46,B93,C14,C82
`Chr2:72861303`	`T`	`TTC`	2bp_insertion	frameshift_variant	6	A7,B29,B46,B93,C14,C82
`Chr2:72861319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C73,C86
`Chr2:72861400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:72861402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:72861403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792342.1

451 aa

226

451

p450

PF00067 p450 15-427 aa

XP_057792343.1

444 aa

222

444

p450

PF00067 p450 15-420 aa

XP_057792344.1

353 aa

176

353

p450

PF00067 p450 19-329 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792342.1`	Pfam	`PF00067`	p450	Domain	15	427	3.1e-78	264.3	Cytochrome P450
`XP_057792343.1`	Pfam	`PF00067`	p450	Domain	15	420	9.4e-74	249.6	Cytochrome P450
`XP_057792344.1`	Pfam	`PF00067`	p450	Domain	19	329	1.9e-61	209.0	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936360.1
GAACAAAGGGAAGGGACCAAAAGAAAAGGTGTTGGAAGAAACTGTATTTTGGTTGACTTATGTATCTCATCTCATCTTCCACTCTTCATACATCCGCTCCTTCCCAAAATAGAAATTAAAAACGAAAATGGATATTTTCATCTGCACAGTTATAATTTCTTGCGCTTCCACAGCAGCACTTGTCTATGGGTAGAGAATCTTGAATTGGTTATGGTTTAGGCCAAGATACGTGGAGAAACGCCTCCGGCAGATTCTTCTAT...

XM_057936359.1
GAACAAAGGGAAGGGACCAAAAGAAAAGGTGTTGGAAGAAACTGTATTTTGGTTGACTTATGTATCTCATCTCATCTTCCACTCTTCATACATCCGCTCCTTCCCAAAATAGAAATTAAAAACGAAAATGGATATTTTCATCTGCACAGTTATAATTTCTTGCGCTTCCACAGCAGCACTTGTCTATGGGTAGAGAATCTTGAATTGGTTATGGTTTAGGCCAAGATACGTGGAGAAACGCCTCCGGCAGATTCTTCTAT...

CDS

3 records

下载 CDS FASTA

LOC131009140
ATGATTTTCTCCCACGATATTGTGCCTAGAGTTATCCCTAGCTTCCACAAAGCTCTCACAAAATATGGCGAGAAATGCTTTGCGTGGTTTGGGCCAACGCCTGCAGTTCTAATCTTGGATCCCGAGATTATAAGGGAGATTATGTCGAAAAATTATGTTTTCCAAAAGCCTTGGGGCAACCCTTTTACTAGACTGCTTGCCGGAGGACTAGCATCGCTCGAGACAGATAAATGGGCCAAGCACAGAAAACTCATCAACCC...

Protein

3 records

下载 Protein FASTA

XP_057792342.1
MIFSHDIVPRVIPSFHKALTKYGEKCFAWFGPTPAVLILDPEIIREIMSKNYVFQKPWGNPFTRLLAGGLASLETDKWAKHRKLINPAFHAEKLKHMVPAFQLSCGEMLSKWDEIVGNKGCCEVDVWPYLESMTGDVISRTAFGSCYEQGRKIFELQREQAKHIMEANRTVHIPGYRFLPTRFNRRMKEGKSEIESILNGMIKKRVKAMEEANNKNDLLGILLDSNFKEESGMSIKEVIEECKLFYFAGQETTASLLVWT...

XP_057792343.1
MIFSHDIVPRVIPSFHKALTKYGEKCFAWFGPTPAVLILDPEIIREIMSKNYVFQKPWGNPFTRLLAGGLASLETDKWAKHRKLINPAFHAEKLKLSCGEMLSKWDEIVGNKGCCEVDVWPYLESMTGDVISRTAFGSCYEQGRKIFELQREQAKHIMEANRTVHIPGYRFLPTRFNRRMKEGKSEIESILNGMIKKRVKAMEEANNKNDLLGILLDSNFKEESGMSIKEVIEECKLFYFAGQETTASLLVWTMILLSKH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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