当前解析结果
SmilChr02G005147| 统一新 Gene ID | SmilChr02G005147 |
|---|---|
| 名称 | SmilChr02G005147 |
| 描述 | cytochrome P450 CYP72A219-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72865368 - 72871152 / - |
| NCBI Gene ID | LOC131009141 |
|---|---|
| GeneID | 131009141 |
| locus_tag | - |
| NCBI Name | LOC131009141 |
| 原始查询 | SmilChr02G005147 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 CYP72A219-like |
| 产物 | cytochrome P450 CYP72A219-like |
| Arabidopsis | AT3G14690 (CYP72A15)cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=51.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0627500 (OsCYP72A18)- identity=51.7; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009141 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792345.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057792345.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792345.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792345.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792345.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72865574 |
GCT |
G |
2bp_deletion | frameshift_variant | 72 | A1,A16,A25,A7,A8,B1,B103,B104,B112,B113,B117,B121,B125,B126,B127,B131,B140,B17,B22,B23,B34,B35,B36,B40,B45,B50,B58,B60,B61,B62,B63,B64,B66,B69,B71,B77,B83,B84,B86,B88,B89,B91,B93,B98,C11,C15,C16,C2,C27,C36,C40,C46,C47,C48,C52,C53,C55,C61,C62,C63,C69,C7,C76,C77,C80,C82,D11,D2,D3,D6,D7,D9 |
Chr2:72865579 |
G |
GCA |
2bp_insertion | frameshift_variant | 72 | A1,A16,A25,A7,A8,B1,B103,B104,B112,B113,B117,B121,B125,B126,B127,B131,B140,B17,B22,B23,B34,B35,B36,B40,B45,B50,B58,B60,B61,B62,B63,B64,B66,B69,B71,B77,B83,B84,B86,B88,B89,B91,B93,B98,C11,C15,C16,C2,C27,C36,C40,C46,C47,C48,C52,C53,C55,C61,C62,C63,C69,C7,C76,C77,C80,C82,D11,D2,D3,D6,D7,D9 |
Chr2:72865598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr2:72865679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B41 |
Chr2:72865760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:72866596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr2:72866602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr2:72866624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,B129,D10 |
Chr2:72867235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B98,C9 |
Chr2:72867268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:72867280 |
G |
GT |
1bp_insertion | frameshift_variant | 7 | A19,B106,B112,B114,B32,C38,D1 |
Chr2:72867363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B98,C9,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792345.1PF00067
p450 84-491 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792345.1 |
Pfam | PF00067 |
p450 | Domain | 84 | 491 | 3.2e-78 | 264.3 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。