Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005147

染色体: Chr02 坐标: 72865368-72871152 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005147
名称SmilChr02G005147
描述cytochrome P450 CYP72A219-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向72865368 - 72871152 / -

ID 对照

NCBI Gene IDLOC131009141
GeneID131009141
locus_tag-
NCBI NameLOC131009141
原始查询SmilChr02G005147

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytochrome P450 CYP72A219-like
产物cytochrome P450 CYP72A219-like
ArabidopsisAT3G14690 (CYP72A15)
cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697]
identity=51.1; qcov=1; evalue=0; confidence=high
RiceOs01g0627500 (OsCYP72A18)
-
identity=51.7; qcov=0.965; evalue=0; confidence=high
GOGO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG-
PfamPF00067 (p450)
InterPro-
eggNOG-
NRGeneID:131009141

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057792345.1
2 Endoplasmic reticulum membrane 内质网膜 0.80000 XP_057792345.1
3 Nucleus 细胞核 0.00000 XP_057792345.1
4 Chromosome 染色体 0.00000 XP_057792345.1
5 Centromere 着丝粒 0.00000 XP_057792345.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:72865574 GCT G 2bp_deletion frameshift_variant 72 A1,A16,A25,A7,A8,B1,B103,B104,B112,B113,B117,B121,B125,B126,B127,B131,B140,B17,B22,B23,B34,B35,B36,B40,B45,B50,B58,B60,B61,B62,B63,B64,B66,B69,B71,B77,B83,B84,B86,B88,B89,B91,B93,B98,C11,C15,C16,C2,C27,C36,C40,C46,C47,C48,C52,C53,C55,C61,C62,C63,C69,C7,C76,C77,C80,C82,D11,D2,D3,D6,D7,D9
Chr2:72865579 G GCA 2bp_insertion frameshift_variant 72 A1,A16,A25,A7,A8,B1,B103,B104,B112,B113,B117,B121,B125,B126,B127,B131,B140,B17,B22,B23,B34,B35,B36,B40,B45,B50,B58,B60,B61,B62,B63,B64,B66,B69,B71,B77,B83,B84,B86,B88,B89,B91,B93,B98,C11,C15,C16,C2,C27,C36,C40,C46,C47,C48,C52,C53,C55,C61,C62,C63,C69,C7,C76,C77,C80,C82,D11,D2,D3,D6,D7,D9
Chr2:72865598 C T EMS_canonical_SNV CDS_variant 1 B67
Chr2:72865679 G A EMS_canonical_SNV CDS_variant 2 B100,B41
Chr2:72865760 G A EMS_canonical_SNV CDS_variant 1 B64
Chr2:72866596 G A EMS_canonical_SNV CDS_variant 1 B67
Chr2:72866602 C T EMS_canonical_SNV CDS_variant 1 A3
Chr2:72866624 G A EMS_canonical_SNV CDS_variant 3 A24,B129,D10
Chr2:72867235 C T EMS_canonical_SNV CDS_variant 3 B105,B98,C9
Chr2:72867268 C T EMS_canonical_SNV CDS_variant 1 C52
Chr2:72867280 G GT 1bp_insertion frameshift_variant 7 A19,B106,B112,B114,B32,C38,D1
Chr2:72867363 G A EMS_canonical_SNV CDS_variant 4 B105,B98,C9,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792345.1
515 aa
N
1
258
515
p450
C
PF00067 p450 84-491 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792345.1 Pfam PF00067 p450 Domain 84 491 3.2e-78 264.3 Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936362.1
TATACACATCTAGACGAAAAGAACACTATGTAAAATAAAACAAGAAAAAAGAAAATCAAAGAAATTACGAAAGTTCTCTTTTCTCTCTTATATATATATATCTATGGCATGAGCCTATGCTCTTTCAATAAACAAAACCACTAATAATTAATGGATGATTTCGCATTCATATTCGCAATCTCTTGCGCTATTATAGCATTAATATATGCTTGCAAGTTCTTGAATTGGATATGGATTAGGCCAAAGAAGCTGGAGAAATT...

CDS

1 records

下载 CDS FASTA
LOC131009141
ATGGATGATTTCGCATTCATATTCGCAATCTCTTGCGCTATTATAGCATTAATATATGCTTGCAAGTTCTTGAATTGGATATGGATTAGGCCAAAGAAGCTGGAGAAATTCCTGAGGCAGCAGGGTTTCAATGGAAATTCTTACAAACTTTTCCATGGAGACTCGACAGAGATGAAGGCGGCTACGAAAGAAGCCATGTCCAAACCCATCAACTTCTCCGACGATATTTTGCCTAGAGTCACTCCCATCTACCACAAAGC...

Protein

1 records

下载 Protein FASTA
XP_057792345.1
MDDFAFIFAISCAIIALIYACKFLNWIWIRPKKLEKFLRQQGFNGNSYKLFHGDSTEMKAATKEAMSKPINFSDDILPRVTPIYHKALHKYGEKCFVWVGPRPTLVILDPEIIREMLLKNYDFHKPPGSPFDRQIANGLSSLEADKWAKHRKLLNPAFHLDKLKHMVPSFYLSCGEMLSKWDEIVGNEGCCEVDVWPHLLTMTSDVISRTAFGSSFEEGRKISQLQKKQAQRVMEENSSVNIPGYRFLPTKANRKTRQTT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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