Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005162`

染色体: Chr02 坐标: 72961236-72963301 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005162`
名称	SmilChr02G005162
描述	uncharacterized SmilChr02G005162
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72961236 - 72963301 / `-`

ID 对照

NCBI Gene ID	`LOC131009152`
GeneID	`131009152`
locus_tag	`-`
NCBI Name	`LOC131009152`
原始查询	`SmilChr02G005162`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	arginine N-methyltransferase, putative (DUF688) [Source:NCBI gene (formerly Entrezgene);Acc:817650]; symbol=AT2G30990; hit=AT2G30990; species=arabidopsis; confidence=low
产物	arginine N-methyltransferase, putative (DUF688) [Source:NCBI gene (formerly Entrezgene);Acc:817650]; symbol=AT2G30990; hit=AT2G30990; species=arabidopsis; confidence=low
Arabidopsis	`AT2G30990` (AT2G30990) arginine N-methyltransferase, putative (DUF688) [Source:NCBI gene (formerly Entrezgene);Acc:817650] identity=34.1; qcov=0.425; evalue=5.85e-12; confidence=low
Rice	`Os01g0758900` - identity=41; qcov=0.192; evalue=1.23e-06; confidence=weak
GO	-
KEGG	-
Pfam	PF05097 (DUF688)
InterPro	-
eggNOG	-
NR	GeneID:131009152

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057792359.1`
2	Nucleus	细胞核	0.40000	`XP_057792359.1`
3	Cytoplasm	细胞质	0.40000	`XP_057792359.1`
4	Cytosol	细胞质基质	0.20000	`XP_057792359.1`
5	Chromosome	染色体	0.00000	`XP_057792359.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72961718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B17,C48,C81
`Chr2:72961894`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C71
`Chr2:72961894`	`TCA`	`T`	2bp_deletion	CDS_variant	1	C71
`Chr2:72961988`	`A`	`AT`	1bp_insertion	frameshift_variant	90	A15,A22,A23,A24,A4,A7,A8,A9,B1,B101,B102,B105,B106,B107,B108,B109,B113,B118,B12,B120,B126,B129,B13,B130,B132,B134,B137,B14,B140,B19,B21,B24,B26,B28,B31,B32,B38,B39,B40,B42,B43,B5,B53,B55,B6,B61,B69,B7,B71,B72,B77,B78,B80,B88,B94,B98,C13,C2,C22,C23,C24,C26,C27,C29,C3,C32,C33,C34,C36,C37,C40,C42,C45,C47,C55,C56,C57,C59,C6,C61,C62,C63,C64,C66,C68,C7,C77,C78,C9,D3
`Chr2:72961989`	`C`	`CAT`	2bp_insertion	frameshift_variant	90	A15,A22,A23,A24,A4,A7,A8,A9,B1,B101,B102,B105,B106,B107,B108,B109,B113,B118,B12,B120,B126,B129,B13,B130,B132,B134,B137,B14,B140,B19,B21,B24,B26,B28,B31,B32,B38,B39,B40,B42,B43,B5,B53,B55,B6,B61,B69,B7,B71,B72,B77,B78,B80,B88,B94,B98,C13,C2,C22,C23,C24,C26,C27,C29,C3,C32,C33,C34,C36,C37,C40,C42,C45,C47,C55,C56,C57,C59,C6,C61,C62,C63,C64,C66,C68,C7,C77,C78,C9,D3
`Chr2:72962075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:72962102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:72962261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B109,B128
`Chr2:72962287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,C11,C69,D11
`Chr2:72962491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,C11,C69,D11
`Chr2:72962499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B105,B67,C9
`Chr2:72962500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792359.1

318 aa

159

318

DUF688

PF05097 DUF688 1-105 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792359.1`	Pfam	`PF05097`	DUF688	Family	1	105	5.9e-22	79.2	Protein of unknown function (DUF688)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009096405.1
TTGAAATCATTGCAGAAACGTGCAAACTCGTTTACTCTCTCTCTCTCTCTCTTATAAATATTGGGGGCATGACTATGTGAGTGTGTGGCATATTTGTTTACGAAGAATTTGACCAAAGTTTGAACATATCTCTCATTTCTTGGATATTAAAAGAGCTGCTGAAAAAACATGGTGGAGAAGAAGCTGAATTTCAATCAACCAATATTATCTGTGAGAAAATACTCACCCAAGAAGGCCTCACACATAGTTGATCAAAGGGA...

XM_057936376.1
TTGAAATCATTGCAGAAACGTGCAAACTCGTTTACTCTCTCTCTCTCTCTCTTATAAATATTGGGGGCATGACTATGTGAGTGTGTGGCATATTTGTTTACGAAGAATTTGACCAAAGTTTGAACATATCTCTCATTTCTTGGATATTAAAAGAGCTGCTGAAAAAACATGGTGGAGAAGAAGCTGAATTTCAATCAACCAATATTATCTGTGAGAAAATACTCACCCAAGAAGGCCTCACACATAGTTGATCAAAGGGA...

CDS

1 records

下载 CDS FASTA

LOC131009152
ATGGTGGAGAAGAAGCTGAATTTCAATCAACCAATATTATCTGTGAGAAAATACTCACCCAAGAAGGCCTCACACATAGTTGATCAAAGGGAAGGCCTCCCACTCCCTCACAGACCAGAGCGGAGCTCTGGTCCTGTGAGGAACCCGGGCTCTGTCCCCTTCATGTGGGAACAGATCCCGGGGCGACCAAAGGAAGAGATCCTGGCACAGTCCCACGTCTGTGCCGGGCCCTTGGTTTCTCCAGAGCCTCCGCCCAGTAC...

Protein

1 records

下载 Protein FASTA

XP_057792359.1
MVEKKLNFNQPILSVRKYSPKKASHIVDQREGLPLPHRPERSSGPVRNPGSVPFMWEQIPGRPKEEILAQSHVCAGPLVSPEPPPSTGMEALLETSEPVEDEGDDLGTKALVRQQEEAVEKAWSDQQHENVITVCCLLPRSCLKSSAFSLNPVSAMSRVMTFPGSRMLSESPVSGSSTDTENECNEQHGPFLEEAPRKKSFKTLQELLADDGVRNVVKMIEDDGVKIGGEVKMIEDGDGDEDEDSDQDSSSGDDIRLAVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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