Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005175

染色体: Chr02 坐标: 73049867-73053673 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005175
名称SmilChr02G005175
描述uncharacterized SmilChr02G005175
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向73049867 - 73053673 / +

ID 对照

NCBI Gene IDLOC131009167
GeneID131009167
locus_tag-
NCBI NameLOC131009167
原始查询SmilChr02G005175

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:NCBI gene (formerly Entrezgene);Acc:825029]; symbol=AT3G58600; hit=AT3G58600; species=arabidopsis; confidence=high
产物Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:NCBI gene (formerly Entrezgene);Acc:825029]; symbol=AT3G58600; hit=AT3G58600; species=arabidopsis; confidence=high
ArabidopsisAT3G58600 (AT3G58600)
Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:NCBI gene (formerly Entrezgene);Acc:825029]
identity=64.3; qcov=1.02; evalue=6.16e-112; confidence=high
RiceOs01g0614700 (OsABCI13)
-
identity=58.9; qcov=1; evalue=4.93e-111; confidence=high
GOGO:0006897 (endocytosis); GO:0016020 (membrane); GO:0030125 (clathrin vesicle coat)
KEGG-
PfamPF07933 (DUF1681)
InterPro-
eggNOG-
NRGeneID:131009167

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057792380.1
2 Cytoplasm 细胞质 0.80000 XP_057792380.1
3 Trans-golgi network Trans-golgi network 0.40000 XP_057792380.1
4 Vesicle 囊泡 0.40000 XP_057792380.1
5 Nucleus 细胞核 0.20000 XP_057792380.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:73050214 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:73051699 G A EMS_canonical_SNV CDS_variant 2 B122,B55
Chr2:73051707 G A EMS_canonical_SNV CDS_variant 2 A15,B59
Chr2:73052686 G A EMS_canonical_SNV CDS_variant 2 B2,C2
Chr2:73052990 G A EMS_canonical_SNV CDS_variant 2 B132,B89
Chr2:73053132 C T EMS_canonical_SNV CDS_variant 2 B73,C47
Chr2:73053243 C T EMS_canonical_SNV CDS_variant 3 B78,B95,C57
Chr2:73053327 C T EMS_canonical_SNV CDS_variant 1 B53
Chr2:73053341 G A EMS_canonical_SNV CDS_variant 3 B106,B109,B128
Chr2:73053370 C T EMS_canonical_SNV CDS_variant 1 B16
Chr2:73053372 C T EMS_canonical_SNV CDS_variant 2 B73,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792380.1
287 aa
N
1
144
287
DUF1681
C
PF07933 DUF1681 23-182 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792380.1 Pfam PF07933 DUF1681 Domain 23 182 2.1e-52 177.7 Protein of unknown function (DUF1681)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936397.1
TCTATTTGTCTATACTAAATTCCAAGAAGGCCAACCACATTATTGAAAATTCCCATCATGTCCTAAAACATTTGGGCTGTGCCACTGCCAACCCCTCTCTAGATCGGAGACGATTCATTCATTGTTTCTATAAGGATCATATGGAGAAAGACAAGGTTACAGAAGAAAAGGAGGAGGTAGTGGAAGAAGAAGAAGCAGATGCAGTTGAGCTGGTTCTGTTTCAAGTCTCGGAATGCTATGTTTACATGATACCTCCACGG...

CDS

1 records

下载 CDS FASTA
LOC131009167
ATGGAGAAAGACAAGGTTACAGAAGAAAAGGAGGAGGTAGTGGAAGAAGAAGAAGCAGATGCAGTTGAGCTGGTTCTGTTTCAAGTCTCGGAATGCTATGTTTACATGATACCTCCACGGATTTCTGCAGCTTCTTACAGGGCTGATGAATGGAATGTCAACAAATGGACGTGGGTAGGTACTTTAAAAGTTATTACTAAAGGAGAAGAATGCATTATCCGGTTGGAGGATAAGACAACAGGTGAGCTGTATGCTCGGGC...

Protein

1 records

下载 Protein FASTA
XP_057792380.1
MEKDKVTEEKEEVVEEEEADAVELVLFQVSECYVYMIPPRISAASYRADEWNVNKWTWVGTLKVITKGEECIIRLEDKTTGELYARAFLRDGEPHPVEAVIDSSRYFVLRVEENIDGRLRHAFIGIGFRERSEAYDFQAALHDHMKYLNKKKTAEEMEHQYQHSSSVDYSLKDGETLVLQLKKKEGGSSTRSQFFEQKLSNLSLDDKSKNKETSVSIKLRPPPPPPLSPVDAPDRSPLGISPEASPGKSFENEESPGVEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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